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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = CCC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653323 (17 seq.)
>W1711628691
MPOJ01000002
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
203323
203249
-
Gly
CCC
[ENA]
¡û
>W1711628764
MPOK01000064
Nitrospirota
Leptospirillum ferriphilum [MPOK]
97376
97302
-
Gly
CCC
[ENA]
¡û
>W141000026
AADL01000627
Unclassified
mine drainage metagenome Group III [AADL]
1106
1032
-
Gly
CCC
[ENA]
¡û
>W141000041
AADL01001034
Unclassified
mine drainage metagenome Group III [AADL]
645
571
-
Gly
CCC
[ENA]
¡û
>W141000167
AADL01002463
Unclassified
mine drainage metagenome Group III [AADL]
12087
12161
+
Gly
CCC
[ENA]
¡û
>W09106620
AAWO01000003
Unclassified
mine drainage metagenome rubarum [AAWO]
84590
84516
-
Gly
CCC
[ENA]
¡û
>W141803163
JPGK01000008
Nitrospirota
Leptospirillum ferriphilum [JPGK]
74362
74436
+
Gly
CCC
[ENA]
¡û
>W1911494718
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
2205887
2205961
+
Gly
CCC
[ENA]
¡û
>C151019621
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
779926
780000
+
Gly
CCC
[Ensembl]
¡û
>C151091675
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
1737397
1737323
-
Gly
CCC
[Ensembl]
¡û
>W1511705737
LGSH01000028
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
99373
99299
-
Gly
CCC
[ENA]
¡û
>W121055881
AIJM01000002
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
35334
35260
-
Gly
CCC
[ENA]
¡û
>C131001608
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
913554
913628
+
Gly
CCC
[Ensembl]
¡û
>WENV077001
AADL01000092
Acid Mine Drainage microbial communities from Richmond mine
1372
1298
-
Gly
CCC
[ENA]
>WENV077034
AADL01000627
Acid Mine Drainage microbial communities from Richmond mine
1106
1032
-
Gly
CCC
[ENA]
>WENV077049
AADL01001034
Acid Mine Drainage microbial communities from Richmond mine
645
571
-
Gly
CCC
[ENA]
>WENV080237
AAWO01000003
Acid Mine Drainage microbial communities from Richmond mine
84590
84516
-
Gly
CCC
[ENA]
Identical group No.674644 (5 seq.)
>W141000032
AADL01000780
Unclassified
mine drainage metagenome Group III [AADL]
371
297
-
Gly
CCC
[ENA]
¡û
>WENV170013487
AUZX01011135
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
634
560
-
Gly
CCC
[ENA]
¢þ
>W09132225
ACNP01000066
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
15090
15164
+
Gly
CCC
[ENA]
¡û
>C121001322
AP012342
Nitrospirota
Leptospirillum ferrooxidans C2-3 [AP012342]
1689590
1689516
-
Gly
CCC
[Ensembl]
¡û
>WENV077040
AADL01000780
Acid Mine Drainage microbial communities from Richmond mine
372
296
-
Gly
CCC
[ENA]
Identical group No.674653 (4 seq.)
>A171007739
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1172872
1172943
+
Gly
CCC
-
¡û
>A171007776
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1176325
1176396
+
Gly
CCC
-
¡û
>W141000150
AADL01002182
Unclassified
mine drainage metagenome Group III [AADL]
459
388
-
Gly
CCC
[ENA]
¡û
>WENV077158
AADL01002182
Acid Mine Drainage microbial communities from Richmond mine
459
385
-
Gly
CCC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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