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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = CCG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240594 (5 seq.)
>W141000029
AADL01000705
Unclassified
mine drainage metagenome Group III [AADL]
49
126
+
Arg
CCG
[ENA]
¡û
>W141000176
AADL01002501
Unclassified
mine drainage metagenome Group III [AADL]
14488
14411
-
Arg
CCG
[ENA]
¡û
>W09106665
AAWO01000085
Unclassified
mine drainage metagenome rubarum [AAWO]
8018
8095
+
Arg
CCG
[ENA]
¡û
>WENV077037
AADL01000705
Acid Mine Drainage microbial communities from Richmond mine
48
127
+
Arg
CCG
[ENA]
>WENV080282
AAWO01000085
Acid Mine Drainage microbial communities from Richmond mine
8017
8096
+
Arg
CCG
[ENA]
Identical group No.488103 (14 seq.)
>A171003616
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
232717
232789
+
Arg
CCG
-
¡û
>A171006620
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1119918
1119990
+
Arg
CCG
-
¡û
>W141000056
AADL01001175
Unclassified
mine drainage metagenome Group III [AADL]
5407
5479
+
Arg
CCG
[ENA]
¡û
>W141000066
AADL01001418
Unclassified
mine drainage metagenome Group III [AADL]
891
963
+
Arg
CCG
[ENA]
¡û
>W141000089
AADL01001523
Unclassified
mine drainage metagenome Group III [AADL]
17335
17407
+
Arg
CCG
[ENA]
¡û
>W141000134
AADL01001898
Unclassified
mine drainage metagenome Group III [AADL]
206
134
-
Arg
CCG
[ENA]
¡û
>W141000149
AADL01002159
Unclassified
mine drainage metagenome Group III [AADL]
456
528
+
Arg
CCG
[ENA]
¡û
>ENV09002115
ACXJ01009965
Mine drainage metagenome Contig1
1209
1281
+
Arg
CCG
[ENA]
¡û
>W1610000055
AABC05000005
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
134731
134803
+
Arg
CCG
[ENA]
¡û
>WENV077064
AADL01001175
Acid Mine Drainage microbial communities from Richmond mine
5407
5482
+
Arg
CCG
[ENA]
>WENV077074
AADL01001418
Acid Mine Drainage microbial communities from Richmond mine
891
966
+
Arg
CCG
[ENA]
>WENV077097
AADL01001523
Acid Mine Drainage microbial communities from Richmond mine
17335
17410
+
Arg
CCG
[ENA]
>WENV077142
AADL01001898
Acid Mine Drainage microbial communities from Richmond mine
206
131
-
Arg
CCG
[ENA]
>WENV077157
AADL01002159
Acid Mine Drainage microbial communities from Richmond mine
456
531
+
Arg
CCG
[ENA]
Identical group No.674648 (5 seq.)
>A171007755
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
861553
861481
-
Arg
CCG
-
¡û
>A171007792
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
864013
863941
-
Arg
CCG
-
¡û
>W141000105
AADL01001629
Unclassified
mine drainage metagenome Group III [AADL]
9833
9759
-
Arg
CCG
[ENA]
¡û
>ENV09002212
ACXJ01011263
Mine drainage metagenome Contig1
1048
1122
+
Arg
CCG
[ENA]
¡û
>WENV077113
AADL01001629
Acid Mine Drainage microbial communities from Richmond mine
9834
9758
-
Arg
CCG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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