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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = CCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270378 (15 seq.)
>W1711628697
MPOJ01000003
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
8605
8529
-
Arg
CCT
[ENA]
¡û
>W1711628758
MPOK01000021
Nitrospirota
Leptospirillum ferriphilum [MPOK]
8598
8522
-
Arg
CCT
[ENA]
¡û
>W141000028
AADL01000698
Unclassified
mine drainage metagenome Group III [AADL]
773
697
-
Arg
CCT
[ENA]
¡û
>W141000039
AADL01000983
Unclassified
mine drainage metagenome Group III [AADL]
343
419
+
Arg
CCT
[ENA]
¡û
>W141000173
AADL01002492
Unclassified
mine drainage metagenome Group III [AADL]
17023
17099
+
Arg
CCT
[ENA]
¡û
>W09106658
AAWO01000079
Unclassified
mine drainage metagenome rubarum [AAWO]
582
506
-
Arg
CCT
[ENA]
¡û
>W141803161
JPGK01000006
Nitrospirota
Leptospirillum ferriphilum [JPGK]
181852
181776
-
Arg
CCT
[ENA]
¡û
>W1911494745
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
349741
349665
-
Arg
CCT
[ENA]
¡û
>C151019648
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
1212303
1212227
-
Arg
CCT
[Ensembl]
¡û
>W1511705767
LGSH01000071
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
13191
13115
-
Arg
CCT
[ENA]
¡û
>C131001635
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1277341
1277265
-
Arg
CCT
[Ensembl]
¡û
>WENV077000
AADL01000084
Acid Mine Drainage microbial communities from Richmond mine
13245
13323
+
Arg
CCT
[ENA]
>WENV077036
AADL01000698
Acid Mine Drainage microbial communities from Richmond mine
774
696
-
Arg
CCT
[ENA]
>WENV077047
AADL01000983
Acid Mine Drainage microbial communities from Richmond mine
342
420
+
Arg
CCT
[ENA]
>WENV080275
AAWO01000079
Acid Mine Drainage microbial communities from Richmond mine
583
505
-
Arg
CCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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