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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = CGA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30273 (3 seq.)
>W141000169
AADL01002483
Unclassified
mine drainage metagenome Group III [AADL]
507
597
+
Ser
CGA
[ENA]
¡û
>W09106630
AAWO01000039
Unclassified
mine drainage metagenome rubarum [AAWO]
4446
4536
+
Ser
CGA
[ENA]
¡û
>WENV080247
AAWO01000039
Acid Mine Drainage microbial communities from Richmond mine
4446
4536
+
Ser
CGA
[ENA]
Identical group No.45664 (9 seq.)
>W1711628732
MPOJ01000030
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
11842
11753
-
Ser
CGA
[ENA]
¡û
>W1711628747
MPOK01000005
Nitrospirota
Leptospirillum ferriphilum [MPOK]
11821
11732
-
Ser
CGA
[ENA]
¡û
>W09106647
AAWO01000060
Unclassified
mine drainage metagenome rubarum [AAWO]
63973
64062
+
Ser
CGA
[ENA]
¡û
>C151019657
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
171182
171093
-
Ser
CGA
[Ensembl]
¡û
>C151091688
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
179819
179730
-
Ser
CGA
[Ensembl]
¡û
>W1511705749
LGSH01000044
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
27705
27794
+
Ser
CGA
[ENA]
¡û
>W121055917
AIJM01000073
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
8449
8538
+
Ser
CGA
[ENA]
¡û
>C131001644
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
166043
165954
-
Ser
CGA
[Ensembl]
¡û
>WENV080266
AAWO01000060
Acid Mine Drainage microbial communities from Richmond mine
63972
64063
+
Ser
CGA
[ENA]
Identical group No.50217 (4 seq.)
>W141000034
AADL01000792
Unclassified
mine drainage metagenome Group III [AADL]
428
339
-
Ser
CGA
[ENA]
¡û
>W09132227
ACNP01000072
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
9853
9942
+
Ser
CGA
[ENA]
¡û
>ENV09002238
ACXJ01011403
Mine drainage metagenome Contig1
16565
16476
-
Ser
CGA
[ENA]
¡û
>WENV077042
AADL01000792
Acid Mine Drainage microbial communities from Richmond mine
429
338
-
Ser
CGA
[ENA]
Identical group No.50219 (4 seq.)
>W141000194
AADL01002506
Unclassified
mine drainage metagenome Group III [AADL]
25991
26080
+
Ser
CGA
[ENA]
¡û
>W141803140
JPGK01000001
Nitrospirota
Leptospirillum ferriphilum [JPGK]
133152
133063
-
Ser
CGA
[ENA]
¡û
>W1911494729
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
1613890
1613801
-
Ser
CGA
[ENA]
¡û
>WENV076991
AADL01000050
Acid Mine Drainage microbial communities from Richmond mine
13000
12909
-
Ser
CGA
[ENA]
Identical group No.119157 (7 seq.)
>A171003615
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
210625
210709
+
Ser
CGA
-
¡û
>A171006619
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1097810
1097894
+
Ser
CGA
-
¡û
>W141000050
AADL01001095
Unclassified
mine drainage metagenome Group III [AADL]
741
657
-
Ser
CGA
[ENA]
¡û
>W141000082
AADL01001503
Unclassified
mine drainage metagenome Group III [AADL]
18806
18890
+
Ser
CGA
[ENA]
¡û
>W1610000054
AABC05000005
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
112639
112723
+
Ser
CGA
[ENA]
¡û
>WENV077058
AADL01001095
Acid Mine Drainage microbial communities from Richmond mine
741
655
-
Ser
CGA
[ENA]
>WENV077091
AADL01001503
Acid Mine Drainage microbial communities from Richmond mine
18806
18892
+
Ser
CGA
[ENA]
Identical group No.158042 (3 seq.)
>W141000129
AADL01001787
Unclassified
mine drainage metagenome Group III [AADL]
2243
2159
-
Ser
CGA
[ENA]
¡û
>ENV09002194
ACXJ01011058
Mine drainage metagenome Contig1
2993
2909
-
Ser
CGA
[ENA]
¡û
>WENV077137
AADL01001787
Acid Mine Drainage microbial communities from Richmond mine
2243
2156
-
Ser
CGA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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