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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = CGC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451320 (17 seq.)
>W1711628703
MPOJ01000006
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
9923
9848
-
Ala
CGC
[ENA]
¡û
>W1711628777
MPOK01000079
Nitrospirota
Leptospirillum ferriphilum [MPOK]
6699
6624
-
Ala
CGC
[ENA]
¡û
>W141000006
AADL01000254
Unclassified
mine drainage metagenome Group III [AADL]
269
194
-
Ala
CGC
[ENA]
¡û
>W141000204
AADL01002518
Unclassified
mine drainage metagenome Group III [AADL]
67053
67128
+
Ala
CGC
[ENA]
¡û
>W09106636
AAWO01000047
Unclassified
mine drainage metagenome rubarum [AAWO]
6747
6672
-
Ala
CGC
[ENA]
¡û
>W141803155
JPGK01000004
Nitrospirota
Leptospirillum ferriphilum [JPGK]
185520
185445
-
Ala
CGC
[ENA]
¡û
>W09132229
ACNP01000077
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
30465
30540
+
Ala
CGC
[ENA]
¡û
>W1911494734
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
1078880
1078805
-
Ala
CGC
[ENA]
¡û
>C151019637
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
1949855
1949780
-
Ala
CGC
[Ensembl]
¡û
>C151091672
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
2273747
2273672
-
Ala
CGC
[Ensembl]
¡û
>ENV09002256
ACXJ01012150
Mine drainage metagenome Contig1
511
436
-
Ala
CGC
[ENA]
¡û
>W1511705759
LGSH01000056
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
49473
49548
+
Ala
CGC
[ENA]
¡û
>W121055884
AIJM01000005
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
56553
56628
+
Ala
CGC
[ENA]
¡û
>C131001624
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
2018579
2018504
-
Ala
CGC
[Ensembl]
¡û
>WENV077008
AADL01000103
Acid Mine Drainage microbial communities from Richmond mine
1726
1651
-
Ala
CGC
[ENA]
>WENV077014
AADL01000254
Acid Mine Drainage microbial communities from Richmond mine
270
193
-
Ala
CGC
[ENA]
>WENV080251
AAWO01000047
Acid Mine Drainage microbial communities from Richmond mine
6747
6672
-
Ala
CGC
[ENA]
Identical group No.674645 (15 seq.)
>W141000038
AADL01000962
Unclassified
mine drainage metagenome Group III [AADL]
757
686
-
Ala
CGC
[ENA]
¡û
>W141000058
AADL01001279
Unclassified
mine drainage metagenome Group III [AADL]
411
340
-
Ala
CGC
[ENA]
¡û
>W141000087
AADL01001520
Unclassified
mine drainage metagenome Group III [AADL]
26675
26746
+
Ala
CGC
[ENA]
¡û
>W141000148
AADL01002121
Unclassified
mine drainage metagenome Group III [AADL]
290
361
+
Ala
CGC
[ENA]
¡û
>W141000151
AADL01002189
Unclassified
mine drainage metagenome Group III [AADL]
641
712
+
Ala
CGC
[ENA]
¡û
>W1910585094
JYHS01000003
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
66669
66598
-
Ala
CGC
[ENA]
¡û
>W1610047584
BBDK01000003
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
36289
36218
-
Ala
CGC
[ENA]
¡û
>W1610642295
LJCQ01000144
Unclassified
Acidiplasma aeolicum V [LJCQ]
1527
1598
+
Ala
CGC
[ENA]
¡û
>W1610670473
LKBG01000242
Unclassified
Acidiplasma aeolicum VT [LKBG]
1778
1849
+
Ala
CGC
[ENA]
¡û
>W1610670503
LKBH01000181
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
26424
26353
-
Ala
CGC
[ENA]
¡û
>WENV077046
AADL01000962
Acid Mine Drainage microbial communities from Richmond mine
757
683
-
Ala
CGC
[ENA]
>WENV077066
AADL01001279
Acid Mine Drainage microbial communities from Richmond mine
411
337
-
Ala
CGC
[ENA]
>WENV077095
AADL01001520
Acid Mine Drainage microbial communities from Richmond mine
26675
26749
+
Ala
CGC
[ENA]
>WENV077156
AADL01002121
Acid Mine Drainage microbial communities from Richmond mine
290
364
+
Ala
CGC
[ENA]
>WENV077159
AADL01002189
Acid Mine Drainage microbial communities from Richmond mine
641
715
+
Ala
CGC
[ENA]
Identical group No.674650 (4 seq.)
>A171007745
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1711435
1711506
+
Ala
CGC
-
¡û
>A171007782
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1678840
1678911
+
Ala
CGC
-
¡û
>W141000138
AADL01001958
Unclassified
mine drainage metagenome Group III [AADL]
3707
3778
+
Ala
CGC
[ENA]
¡û
>WENV077146
AADL01001958
Acid Mine Drainage microbial communities from Richmond mine
3707
3781
+
Ala
CGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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