This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = CGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270373 (17 seq.)
>W1711628727
MPOJ01000021
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
48812
48888
+
Pro
CGG
[ENA]
¡û
>W1711628778
MPOK01000089
Nitrospirota
Leptospirillum ferriphilum [MPOK]
14654
14578
-
Pro
CGG
[ENA]
¡û
>W141000183
AADL01002503
Unclassified
mine drainage metagenome Group III [AADL]
108074
108150
+
Pro
CGG
[ENA]
¡û
>W141085060
AURA01000320
Nitrospirota
Leptospirillum sp. Group IV 'UBA BS' [AURA]
710
786
+
Pro
CGG
[ENA]
¡û
>W09106638
AAWO01000056
Unclassified
mine drainage metagenome rubarum [AAWO]
58377
58301
-
Pro
CGG
[ENA]
¡û
>W09132240
ACNP01000120
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
10592
10516
-
Pro
CGG
[ENA]
¡û
>W141803164
JPGK01000009
Nitrospirota
Leptospirillum ferriphilum [JPGK]
27847
27771
-
Pro
CGG
[ENA]
¡û
>W1911494742
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
485133
485057
-
Pro
CGG
[ENA]
¡û
>C151019645
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
1346346
1346270
-
Pro
CGG
[Ensembl]
¡û
>C151091657
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
1116243
1116319
+
Pro
CGG
[Ensembl]
¡û
>ENV09002129
ACXJ01010208
Mine drainage metagenome Contig1
692
768
+
Pro
CGG
[ENA]
¡û
>ENV09002226
ACXJ01011348
Mine drainage metagenome Contig1
1788
1864
+
Pro
CGG
[ENA]
¡û
>W1511705731
LGSH01000009
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
69898
69974
+
Pro
CGG
[ENA]
¡û
>W121055915
AIJM01000072
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
1978
2054
+
Pro
CGG
[ENA]
¡û
>C131001632
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1411467
1411391
-
Pro
CGG
[Ensembl]
¡û
>WENV076989
AADL01000048
Acid Mine Drainage microbial communities from Richmond mine
27872
27794
-
Pro
CGG
[ENA]
>WENV080257
AAWO01000056
Acid Mine Drainage microbial communities from Richmond mine
58378
58300
-
Pro
CGG
[ENA]
Identical group No.488111 (5 seq.)
>A171007752
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1398998
1398926
-
Pro
CGG
-
¡û
>A171007789
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1393176
1393104
-
Pro
CGG
-
¡û
>W141000123
AADL01001748
Unclassified
mine drainage metagenome Group III [AADL]
3458
3530
+
Pro
CGG
[ENA]
¡û
>ENV09002248
ACXJ01012059
Mine drainage metagenome Contig1
3879
3807
-
Pro
CGG
[ENA]
¡û
>WENV077131
AADL01001748
Acid Mine Drainage microbial communities from Richmond mine
3458
3533
+
Pro
CGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK