This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = CGT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.488094 (4 seq.)
>W141000033
AADL01000791
Unclassified
mine drainage metagenome Group III [AADL]
1826
1754
-
Thr
CGT
[ENA]
¡û
>ENV09002168
ACXJ01010647
Mine drainage metagenome Contig1
1803
1731
-
Thr
CGT
[ENA]
¡û
>ENV09002293
ACXK01000067
Thermoplasmatales archaeon A-plasma AplasmaContig10144
21225
21153
-
Thr
CGT
[ENA]
¡û
>WENV077041
AADL01000791
Acid Mine Drainage microbial communities from Richmond mine
1826
1751
-
Thr
CGT
[ENA]
Identical group No.488102 (7 seq.)
>A171003618
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
414357
414431
+
Thr
CGT
-
¡û
>A171006622
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1302235
1302309
+
Thr
CGT
-
¡û
>W141000054
AADL01001146
Unclassified
mine drainage metagenome Group III [AADL]
722
648
-
Thr
CGT
[ENA]
¡û
>W141000079
AADL01001502
Unclassified
mine drainage metagenome Group III [AADL]
35438
35512
+
Thr
CGT
[ENA]
¡û
>W1610000057
AABC05000008
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
177849
177923
+
Thr
CGT
[ENA]
¡û
>WENV077062
AADL01001146
Acid Mine Drainage microbial communities from Richmond mine
722
645
-
Thr
CGT
[ENA]
>WENV077087
AADL01001502
Acid Mine Drainage microbial communities from Richmond mine
35438
35515
+
Thr
CGT
[ENA]
Identical group No.488108 (5 seq.)
>A171007730
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
537994
538066
+
Thr
CGT
-
¡û
>A171007767
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
522269
522341
+
Thr
CGT
-
¡û
>W141000106
AADL01001631
Unclassified
mine drainage metagenome Group III [AADL]
5745
5673
-
Thr
CGT
[ENA]
¡û
>ENV09002151
ACXJ01010543
Mine drainage metagenome Contig1
4514
4586
+
Thr
CGT
[ENA]
¡û
>WENV077114
AADL01001631
Acid Mine Drainage microbial communities from Richmond mine
5745
5670
-
Thr
CGT
[ENA]
Identical group No.653324 (21 seq.)
>W1711628694
MPOJ01000002
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
12781
12707
-
Thr
CGT
[ENA]
¡û
>W1711628767
MPOK01000065
Nitrospirota
Leptospirillum ferriphilum [MPOK]
93124
93198
+
Thr
CGT
[ENA]
¡û
>W141000011
AADL01000389
Unclassified
mine drainage metagenome Group III [AADL]
3
77
+
Thr
CGT
[ENA]
¡û
>W141000042
AADL01001052
Unclassified
mine drainage metagenome Group III [AADL]
2621
2547
-
Thr
CGT
[ENA]
¡û
>W141000171
AADL01002490
Unclassified
mine drainage metagenome Group III [AADL]
47852
47926
+
Thr
CGT
[ENA]
¡û
>W141000212
AADL01002531
Unclassified
mine drainage metagenome Group III [AADL]
14322
14248
-
Thr
CGT
[ENA]
¡û
>W09106628
AAWO01000016
Unclassified
mine drainage metagenome rubarum [AAWO]
33899
33973
+
Thr
CGT
[ENA]
¡û
>W09132220
ACNP01000065
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
16440
16366
-
Thr
CGT
[ENA]
¡û
>W141803158
JPGK01000005
Nitrospirota
Leptospirillum ferriphilum [JPGK]
29464
29538
+
Thr
CGT
[ENA]
¡û
>W1911494721
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
2401652
2401726
+
Thr
CGT
[ENA]
¡û
>C151019624
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
988016
988088
+
Thr
CGT
[Ensembl]
¡û
>C151091678
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
1533038
1532964
-
Thr
CGT
[Ensembl]
¡û
>ENV09002012
ACXJ01006574
Mine drainage metagenome Contig1
623
697
+
Thr
CGT
[ENA]
¡û
>ENV09002171
ACXJ01010688
Mine drainage metagenome Contig1
4333
4407
+
Thr
CGT
[ENA]
¡û
>W1511705734
LGSH01000023
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
8351
8277
-
Thr
CGT
[ENA]
¡û
>W121055910
AIJM01000055
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
8484
8410
-
Thr
CGT
[ENA]
¡û
>C131001611
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1104105
1104179
+
Thr
CGT
[Ensembl]
¡û
>WENV076996
AADL01000070
Acid Mine Drainage microbial communities from Richmond mine
12950
13024
+
Thr
CGT
[ENA]
>WENV077019
AADL01000389
Acid Mine Drainage microbial communities from Richmond mine
3
77
+
Thr
CGT
[ENA]
>WENV077050
AADL01001052
Acid Mine Drainage microbial communities from Richmond mine
2621
2547
-
Thr
CGT
[ENA]
>WENV080246
AAWO01000016
Acid Mine Drainage microbial communities from Richmond mine
33899
33973
+
Thr
CGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK