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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = CTC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245175 (5 seq.)
>A171007743
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1327545
1327619
+
Glu
CTC
-
¡û
>A171007780
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1329125
1329199
+
Glu
CTC
-
¡û
>W141000101
AADL01001619
Unclassified
mine drainage metagenome Group III [AADL]
2660
2734
+
Glu
CTC
[ENA]
¡û
>ENV09002172
ACXJ01010700
Mine drainage metagenome Contig1
1995
1921
-
Glu
CTC
[ENA]
¡û
>WENV077109
AADL01001619
Acid Mine Drainage microbial communities from Richmond mine
2660
2737
+
Glu
CTC
[ENA]
Identical group No.451321 (13 seq.)
>W1711628701
MPOJ01000006
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
50536
50611
+
Glu
CTC
[ENA]
¡û
>W1711628751
MPOK01000008
Nitrospirota
Leptospirillum ferriphilum [MPOK]
106927
106852
-
Glu
CTC
[ENA]
¡û
>W141000207
AADL01002518
Unclassified
mine drainage metagenome Group III [AADL]
26406
26331
-
Glu
CTC
[ENA]
¡û
>W09106634
AAWO01000047
Unclassified
mine drainage metagenome rubarum [AAWO]
47361
47436
+
Glu
CTC
[ENA]
¡û
>W141803153
JPGK01000004
Nitrospirota
Leptospirillum ferriphilum [JPGK]
226167
226242
+
Glu
CTC
[ENA]
¡û
>W1911494706
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
1119528
1119603
+
Glu
CTC
[ENA]
¡û
>C151019631
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
1990445
1990520
+
Glu
CTC
[Ensembl]
¡û
>C151091666
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
2314358
2314433
+
Glu
CTC
[Ensembl]
¡û
>W1511705761
LGSH01000056
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
8860
8785
-
Glu
CTC
[ENA]
¡û
>W121055885
AIJM01000005
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
15942
15867
-
Glu
CTC
[ENA]
¡û
>C131001618
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
2059191
2059266
+
Glu
CTC
[Ensembl]
¡û
>WENV076982
AADL01000023
Acid Mine Drainage microbial communities from Richmond mine
34079
34156
+
Glu
CTC
[ENA]
>WENV080252
AAWO01000047
Acid Mine Drainage microbial communities from Richmond mine
47360
47437
+
Glu
CTC
[ENA]
Identical group No.488090 (6 seq.)
>W141000005
AADL01000249
Unclassified
mine drainage metagenome Group III [AADL]
1760
1835
+
Glu
CTC
[ENA]
¡û
>W141085065
AURA01000391
Nitrospirota
Leptospirillum sp. Group IV 'UBA BS' [AURA]
344
419
+
Glu
CTC
[ENA]
¡û
>W09132238
ACNP01000103
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
28718
28793
+
Glu
CTC
[ENA]
¡û
>ENV09002123
ACXJ01010104
Mine drainage metagenome Contig1
2180
2255
+
Glu
CTC
[ENA]
¡û
>ENV09002161
ACXJ01010606
Mine drainage metagenome Contig1
345
420
+
Glu
CTC
[ENA]
¡û
>WENV077013
AADL01000249
Acid Mine Drainage microbial communities from Richmond mine
1760
1835
+
Glu
CTC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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