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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = CTG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.488097 (3 seq.)
>W141000040
AADL01001028
Unclassified
mine drainage metagenome Group III [AADL]
594
522
-
Gln
CTG
[ENA]
¡û
>ENV09002295
ACXK01000072
Thermoplasmatales archaeon A-plasma AplasmaContig10144
37068
37140
+
Gln
CTG
[ENA]
¡û
>WENV077048
AADL01001028
Acid Mine Drainage microbial communities from Richmond mine
594
519
-
Gln
CTG
[ENA]
Identical group No.488101 (7 seq.)
>A171003639
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
649711
649639
-
Gln
CTG
-
¡û
>A171006631
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1514155
1514083
-
Gln
CTG
-
¡û
>W141000053
AADL01001111
Unclassified
mine drainage metagenome Group III [AADL]
9571
9499
-
Gln
CTG
[ENA]
¡û
>W141000095
AADL01001561
Unclassified
mine drainage metagenome Group III [AADL]
8239
8311
+
Gln
CTG
[ENA]
¡û
>W1610000062
AABC05000009
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
186869
186797
-
Gln
CTG
[ENA]
¡û
>WENV077061
AADL01001111
Acid Mine Drainage microbial communities from Richmond mine
9571
9496
-
Gln
CTG
[ENA]
>WENV077103
AADL01001561
Acid Mine Drainage microbial communities from Richmond mine
8239
8314
+
Gln
CTG
[ENA]
Identical group No.488110 (4 seq.)
>A171007732
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
667938
668011
+
Gln
CTG
-
¡û
>A171007769
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
668494
668567
+
Gln
CTG
-
¡û
>W141000120
AADL01001705
Unclassified
mine drainage metagenome Group III [AADL]
7800
7873
+
Gln
CTG
[ENA]
¡û
>WENV077128
AADL01001705
Acid Mine Drainage microbial communities from Richmond mine
7799
7876
+
Gln
CTG
[ENA]
Identical group No.779376 (14 seq.)
>W1711628722
MPOJ01000017
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
280
353
+
Gln
CTG
[ENA]
¡û
>W1711628755
MPOK01000013
Nitrospirota
Leptospirillum ferriphilum [MPOK]
49219
49146
-
Gln
CTG
[ENA]
¡û
>W141000202
AADL01002514
Unclassified
mine drainage metagenome Group III [AADL]
28853
28926
+
Gln
CTG
[ENA]
¡û
>W09106655
AAWO01000067
Unclassified
mine drainage metagenome rubarum [AAWO]
203791
203718
-
Gln
CTG
[ENA]
¡û
>W141803142
JPGK01000002
Nitrospirota
Leptospirillum ferriphilum [JPGK]
83388
83461
+
Gln
CTG
[ENA]
¡û
>W1911494708
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
1220222
1220295
+
Gln
CTG
[ENA]
¡û
>C151019633
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
2095864
2095937
+
Gln
CTG
[Ensembl]
¡û
>C151091668
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
2447166
2447239
+
Gln
CTG
[Ensembl]
¡û
>ENV09002201
ACXJ01011111
Mine drainage metagenome Contig1
431
504
+
Gln
CTG
[ENA]
¡û
>W1511705757
LGSH01000054
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
26044
25971
-
Gln
CTG
[ENA]
¡û
>W121055904
AIJM01000040
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
5368
5295
-
Gln
CTG
[ENA]
¡û
>C131001620
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
2147618
2147691
+
Gln
CTG
[Ensembl]
¡û
>WENV076981
AADL01000018
Acid Mine Drainage microbial communities from Richmond mine
29864
29939
+
Gln
CTG
[ENA]
>WENV080272
AAWO01000067
Acid Mine Drainage microbial communities from Richmond mine
203792
203717
-
Gln
CTG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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