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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = CTT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.304175 (11 seq.)
>A171003637
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1084990
1084915
-
Lys
CTT
-
¡û
>A171006641
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
115375
115301
-
Lys
CTT
-
¡û
>W141000065
AADL01001403
Unclassified
mine drainage metagenome Group III [AADL]
928
854
-
Lys
CTT
[ENA]
¡û
>W141000093
AADL01001538
Unclassified
mine drainage metagenome Group III [AADL]
20995
21069
+
Lys
CTT
[ENA]
¡û
>W1910585079
JYHS01000002
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
435616
435690
+
Lys
CTT
[ENA]
¡û
>W1610000074
AABC05000011
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
212056
211981
-
Lys
CTT
[ENA]
¡û
>W1610047581
BBDK01000002
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
58399
58473
+
Lys
CTT
[ENA]
¡û
>W1610670451
LKBG01000001
Unclassified
Acidiplasma aeolicum VT [LKBG]
11466
11392
-
Lys
CTT
[ENA]
¡û
>W1610670498
LKBH01000125
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
20728
20802
+
Lys
CTT
[ENA]
¡û
>WENV077073
AADL01001403
Acid Mine Drainage microbial communities from Richmond mine
929
851
-
Lys
CTT
[ENA]
>WENV077101
AADL01001538
Acid Mine Drainage microbial communities from Richmond mine
20994
21072
+
Lys
CTT
[ENA]
Identical group No.304179 (5 seq.)
>A171007744
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1515590
1515664
+
Lys
CTT
-
¡û
>A171007781
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1503586
1503660
+
Lys
CTT
-
¡û
>W141000124
AADL01001761
Unclassified
mine drainage metagenome Group III [AADL]
2338
2414
+
Lys
CTT
[ENA]
¡û
>ENV09002162
ACXJ01010617
Mine drainage metagenome Contig1
2866
2940
+
Lys
CTT
[ENA]
¡û
>WENV077132
AADL01001761
Acid Mine Drainage microbial communities from Richmond mine
2337
2415
+
Lys
CTT
[ENA]
Identical group No.451319 (15 seq.)
>W1711628698
MPOJ01000005
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
16253
16328
+
Lys
CTT
[ENA]
¡û
>W1711628769
MPOK01000066
Nitrospirota
Leptospirillum ferriphilum [MPOK]
36898
36973
+
Lys
CTT
[ENA]
¡û
>W141000205
AADL01002518
Unclassified
mine drainage metagenome Group III [AADL]
147163
147238
+
Lys
CTT
[ENA]
¡û
>W09106633
AAWO01000046
Unclassified
mine drainage metagenome rubarum [AAWO]
52924
52849
-
Lys
CTT
[ENA]
¡û
>W141803156
JPGK01000004
Nitrospirota
Leptospirillum ferriphilum [JPGK]
107178
107103
-
Lys
CTT
[ENA]
¡û
>W1911494735
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
1000537
1000462
-
Lys
CTT
[ENA]
¡û
>C151019638
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
1871634
1871559
-
Lys
CTT
[Ensembl]
¡û
>C151091673
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
2186690
2186615
-
Lys
CTT
[Ensembl]
¡û
>ENV09002191
ACXJ01011053
Mine drainage metagenome Contig1
287
362
+
Lys
CTT
[ENA]
¡û
>W1511705760
LGSH01000056
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
127614
127689
+
Lys
CTT
[ENA]
¡û
>W121055911
AIJM01000057
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
78951
79026
+
Lys
CTT
[ENA]
¡û
>C131001625
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1940175
1940100
-
Lys
CTT
[Ensembl]
¡û
>WENV076976
AADL01000016
Acid Mine Drainage microbial communities from Richmond mine
2005
1930
-
Lys
CTT
[ENA]
>WENV076987
AADL01000045
Acid Mine Drainage microbial communities from Richmond mine
441
516
+
Lys
CTT
[ENA]
>WENV080250
AAWO01000046
Acid Mine Drainage microbial communities from Richmond mine
52924
52849
-
Lys
CTT
[ENA]
Identical group No.488091 (8 seq.)
>W141000015
AADL01000461
Unclassified
mine drainage metagenome Group III [AADL]
4119
4194
+
Lys
CTT
[ENA]
¡û
>W141000022
AADL01000562
Unclassified
mine drainage metagenome Group III [AADL]
3597
3522
-
Lys
CTT
[ENA]
¡û
>WENV170013450
AUZX01006873
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
300
375
+
Lys
CTT
[ENA]
¢þ
>W09132209
ACNP01000051
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
11352
11427
+
Lys
CTT
[ENA]
¡û
>ENV09002023
ACXJ01007020
Mine drainage metagenome Contig1
922
847
-
Lys
CTT
[ENA]
¡û
>C121001296
AP012342
Nitrospirota
Leptospirillum ferrooxidans C2-3 [AP012342]
516597
516672
+
Lys
CTT
[Ensembl]
¡û
>WENV077023
AADL01000461
Acid Mine Drainage microbial communities from Richmond mine
4119
4194
+
Lys
CTT
[ENA]
>WENV077030
AADL01000562
Acid Mine Drainage microbial communities from Richmond mine
3597
3522
-
Lys
CTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK