This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = GAC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653329 (17 seq.)
>W1711628724
MPOJ01000017
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
137999
137925
-
Val
GAC
[ENA]
¡û
>W1711628770
MPOK01000067
Nitrospirota
Leptospirillum ferriphilum [MPOK]
88519
88445
-
Val
GAC
[ENA]
¡û
>W141000037
AADL01000881
Unclassified
mine drainage metagenome Group III [AADL]
1148
1074
-
Val
GAC
[ENA]
¡û
>W141000201
AADL01002512
Unclassified
mine drainage metagenome Group III [AADL]
64
138
+
Val
GAC
[ENA]
¡û
>W09106654
AAWO01000067
Unclassified
mine drainage metagenome rubarum [AAWO]
64625
64699
+
Val
GAC
[ENA]
¡û
>W09132205
ACNP01000045
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
3358
3284
-
Val
GAC
[ENA]
¡û
>W141803144
JPGK01000002
Nitrospirota
Leptospirillum ferriphilum [JPGK]
228430
228356
-
Val
GAC
[ENA]
¡û
>W1911494732
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
1365264
1365190
-
Val
GAC
[ENA]
¡û
>C151019635
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
2233583
2233509
-
Val
GAC
[Ensembl]
¡û
>C151091670
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
2600390
2600316
-
Val
GAC
[Ensembl]
¡û
>ENV09002004
ACXJ01005891
Mine drainage metagenome Contig1
360
434
+
Val
GAC
[ENA]
¡û
>W1511705756
LGSH01000048
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
89166
89240
+
Val
GAC
[ENA]
¡û
>C121001318
AP012342
Nitrospirota
Leptospirillum ferrooxidans C2-3 [AP012342]
2287796
2287722
-
Val
GAC
[Ensembl]
¡û
>W121055896
AIJM01000027
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
4078
4152
+
Val
GAC
[ENA]
¡û
>C131001622
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
2285342
2285268
-
Val
GAC
[Ensembl]
¡û
>WENV077045
AADL01000881
Acid Mine Drainage microbial communities from Richmond mine
1149
1073
-
Val
GAC
[ENA]
>WENV080271
AAWO01000067
Acid Mine Drainage microbial communities from Richmond mine
64625
64699
+
Val
GAC
[ENA]
Identical group No.664258 (12 seq.)
>A171007762
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
178886
178814
-
Val
GAC
-
¡û
>A171007799
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
158117
158045
-
Val
GAC
-
¡û
>W141000098
AADL01001603
Unclassified
mine drainage metagenome Group III [AADL]
5356
5427
+
Val
GAC
[ENA]
¡û
>W141000111
AADL01001647
Unclassified
mine drainage metagenome Group III [AADL]
15680
15609
-
Val
GAC
[ENA]
¡û
>WENV181292512
OFHE01031356
[OFHE] soil metagenome; Clay
438
366
-
Val
GAC
[ENA]
¢þ
>WENV181295132
OFHI01000775
[OFHI] soil metagenome; Clay
854
782
-
Val
GAC
[ENA]
¢þ
>ENV09001968
ACXJ01002191
Mine drainage metagenome Contig1
912
984
+
Val
GAC
[ENA]
¡û
>ENV09002170
ACXJ01010686
Mine drainage metagenome Contig1
297
226
-
Val
GAC
[ENA]
¡û
>ENV09002231
ACXJ01011373
Mine drainage metagenome Contig1
4433
4360
-
Val
GAC
[ENA]
¡û
>ENV09002273
ACXK01000024
Thermoplasmatales archaeon A-plasma AplasmaContig10144
3416
3344
-
Val
GAC
[ENA]
¡û
>WENV077106
AADL01001603
Acid Mine Drainage microbial communities from Richmond mine
5356
5430
+
Val
GAC
[ENA]
>WENV077119
AADL01001647
Acid Mine Drainage microbial communities from Richmond mine
15680
15606
-
Val
GAC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK