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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = GAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.217994 (13 seq.)
>W1711628720
MPOJ01000016
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
28083
28166
+
Leu
GAG
[ENA]
¡û
>W1711628775
MPOK01000073
Nitrospirota
Leptospirillum ferriphilum [MPOK]
16656
16739
+
Leu
GAG
[ENA]
¡û
>W141000198
AADL01002507
Unclassified
mine drainage metagenome Group III [AADL]
56213
56130
-
Leu
GAG
[ENA]
¡û
>W09106651
AAWO01000061
Unclassified
mine drainage metagenome rubarum [AAWO]
92862
92779
-
Leu
GAG
[ENA]
¡û
>W141803130
JPGK01000001
Nitrospirota
Leptospirillum ferriphilum [JPGK]
31098
31181
+
Leu
GAG
[ENA]
¡û
>W1911494709
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
1511834
1511917
+
Leu
GAG
[ENA]
¡û
>C151019613
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
69154
69237
+
Leu
GAG
[Ensembl]
¡û
>C151091643
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
72754
72837
+
Leu
GAG
[Ensembl]
¡û
>W1511705754
LGSH01000045
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
1717
1634
-
Leu
GAG
[ENA]
¡û
>W121055882
AIJM01000003
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
52547
52464
-
Leu
GAG
[ENA]
¡û
>C131001599
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
64004
64087
+
Leu
GAG
[Ensembl]
¡û
>WENV076971
AADL01000006
Acid Mine Drainage microbial communities from Richmond mine
83817
83732
-
Leu
GAG
[ENA]
>WENV080269
AAWO01000061
Acid Mine Drainage microbial communities from Richmond mine
92863
92778
-
Leu
GAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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