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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = GAT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245173 (6 seq.)
>W141000086
AADL01001518
Unclassified
mine drainage metagenome Group III [AADL]
5226
5152
-
Ile
GAT
[ENA]
¡û
>W141000136
AADL01001913
Unclassified
mine drainage metagenome Group III [AADL]
587
661
+
Ile
GAT
[ENA]
¡û
>W141000155
AADL01002291
Unclassified
mine drainage metagenome Group III [AADL]
3059
3133
+
Ile
GAT
[ENA]
¡û
>WENV077094
AADL01001518
Acid Mine Drainage microbial communities from Richmond mine
5226
5149
-
Ile
GAT
[ENA]
>WENV077144
AADL01001913
Acid Mine Drainage microbial communities from Richmond mine
587
664
+
Ile
GAT
[ENA]
>WENV077163
AADL01002291
Acid Mine Drainage microbial communities from Richmond mine
3059
3136
+
Ile
GAT
[ENA]
Identical group No.245176 (5 seq.)
>A171007727
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
243735
243809
+
Ile
GAT
-
¡û
>A171007764
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
222990
223064
+
Ile
GAT
-
¡û
>W141000108
AADL01001640
Unclassified
mine drainage metagenome Group III [AADL]
7773
7696
-
Ile
GAT
[ENA]
¡û
>ENV09002211
ACXJ01011262
Mine drainage metagenome Contig1
8812
8735
-
Ile
GAT
[ENA]
¡û
>WENV077116
AADL01001640
Acid Mine Drainage microbial communities from Richmond mine
7773
7696
-
Ile
GAT
[ENA]
Identical group No.245177 (10 seq.)
>A171003619
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
477508
477582
+
Ile
GAT
-
¡û
>A171006623
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1369792
1369866
+
Ile
GAT
-
¡û
>W141000113
AADL01001652
Unclassified
mine drainage metagenome Group III [AADL]
5938
6012
+
Ile
GAT
[ENA]
¡û
>W1910585065
JYHS01000001
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
343617
343691
+
Ile
GAT
[ENA]
¡û
>W1610000059
AABC05000009
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
14656
14730
+
Ile
GAT
[ENA]
¡û
>W1610047600
BBDK01000031
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
5450
5376
-
Ile
GAT
[ENA]
¡û
>W1610642302
LJCQ01000179
Unclassified
Acidiplasma aeolicum V [LJCQ]
7137
7063
-
Ile
GAT
[ENA]
¡û
>W1610670455
LKBG01000078
Unclassified
Acidiplasma aeolicum VT [LKBG]
11875
11949
+
Ile
GAT
[ENA]
¡û
>W1610670493
LKBH01000066
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
1010
936
-
Ile
GAT
[ENA]
¡û
>WENV077121
AADL01001652
Acid Mine Drainage microbial communities from Richmond mine
5938
6015
+
Ile
GAT
[ENA]
Identical group No.270372 (21 seq.)
>W1711628695
MPOJ01000003
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
27087
27163
+
Ile
GAT
[ENA]
¡û
>W1711628756
MPOK01000021
Nitrospirota
Leptospirillum ferriphilum [MPOK]
27081
27157
+
Ile
GAT
[ENA]
¡û
>W141000184
AADL01002504
Unclassified
mine drainage metagenome Group III [AADL]
1862
1938
+
Ile
GAT
[ENA]
¡û
>W141000186
AADL01002504
Unclassified
mine drainage metagenome Group III [AADL]
73329
73253
-
Ile
GAT
[ENA]
¡û
>W09106639
AAWO01000056
Unclassified
mine drainage metagenome rubarum [AAWO]
13080
13004
-
Ile
GAT
[ENA]
¡û
>W1911494701
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
368229
368305
+
Ile
GAT
[ENA]
¡û
>W1911494743
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
439807
439731
-
Ile
GAT
[ENA]
¡û
>C151019626
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
1230785
1230861
+
Ile
GAT
[Ensembl]
¡û
>C151019646
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
1301087
1301011
-
Ile
GAT
[Ensembl]
¡û
>C151091658
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
1165010
1165086
+
Ile
GAT
[Ensembl]
¡û
>C151091680
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
1239510
1239434
-
Ile
GAT
[Ensembl]
¡û
>W1511705732
LGSH01000013
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
1922
1998
+
Ile
GAT
[ENA]
¡û
>C121001305
AP012342
Nitrospirota
Leptospirillum ferrooxidans C2-3 [AP012342]
1060223
1060299
+
Ile
GAT
[Ensembl]
¡û
>C121001307
AP012342
Nitrospirota
Leptospirillum ferrooxidans C2-3 [AP012342]
1068832
1068908
+
Ile
GAT
[Ensembl]
¡û
>C121001310
AP012342
Nitrospirota
Leptospirillum ferrooxidans C2-3 [AP012342]
1215666
1215742
+
Ile
GAT
[Ensembl]
¡û
>W121055891
AIJM01000012
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
16966
17042
+
Ile
GAT
[ENA]
¡û
>W121055912
AIJM01000065
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
32129
32205
+
Ile
GAT
[ENA]
¡û
>C131001613
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1295822
1295898
+
Ile
GAT
[Ensembl]
¡û
>C131001633
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1366170
1366094
-
Ile
GAT
[Ensembl]
¡û
>WENV076999
AADL01000078
Acid Mine Drainage microbial communities from Richmond mine
2286
2208
-
Ile
GAT
[ENA]
>WENV080256
AAWO01000056
Acid Mine Drainage microbial communities from Richmond mine
13081
13003
-
Ile
GAT
[ENA]
Identical group No.304169 (7 seq.)
>W141000019
AADL01000473
Unclassified
mine drainage metagenome Group III [AADL]
2308
2232
-
Ile
GAT
[ENA]
¡û
>W141085067
AURA01000402
Nitrospirota
Leptospirillum sp. Group IV 'UBA BS' [AURA]
1130
1206
+
Ile
GAT
[ENA]
¡û
>WENV170013494
AUZX01012147
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
70
146
+
Ile
GAT
[ENA]
¢þ
>W09132217
ACNP01000064
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
20719
20643
-
Ile
GAT
[ENA]
¡û
>ENV09002018
ACXJ01006897
Mine drainage metagenome Contig1
393
469
+
Ile
GAT
[ENA]
¡û
>ENV09002165
ACXJ01010641
Mine drainage metagenome Contig1
1132
1208
+
Ile
GAT
[ENA]
¡û
>WENV077028
AADL01000473
Acid Mine Drainage microbial communities from Richmond mine
2308
2232
-
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK