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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = GCC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.488116 (7 seq.)
>A171007756
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
689999
689927
-
Gly
GCC
-
¡û
>A171007793
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
694752
694680
-
Gly
GCC
-
¡û
>W141000145
AADL01002065
Unclassified
mine drainage metagenome Group III [AADL]
4081
4153
+
Gly
GCC
[ENA]
¡û
>W141000154
AADL01002249
Unclassified
mine drainage metagenome Group III [AADL]
574
646
+
Gly
GCC
[ENA]
¡û
>ENV09002149
ACXJ01010523
Mine drainage metagenome Contig1
972
1044
+
Gly
GCC
[ENA]
¡û
>WENV077154
AADL01002065
Acid Mine Drainage microbial communities from Richmond mine
4081
4156
+
Gly
GCC
[ENA]
>WENV077162
AADL01002249
Acid Mine Drainage microbial communities from Richmond mine
574
649
+
Gly
GCC
[ENA]
Identical group No.653325 (21 seq.)
>W1711628700
MPOJ01000005
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
47247
47173
-
Gly
GCC
[ENA]
¡û
>W1711628742
MPOK01000003
Nitrospirota
Leptospirillum ferriphilum [MPOK]
46139
46213
+
Gly
GCC
[ENA]
¡û
>W141000206
AADL01002518
Unclassified
mine drainage metagenome Group III [AADL]
203390
203316
-
Gly
GCC
[ENA]
¡û
>W141000210
AADL01002524
Unclassified
mine drainage metagenome Group III [AADL]
9334
9260
-
Gly
GCC
[ENA]
¡û
>W09106632
AAWO01000040
Unclassified
mine drainage metagenome rubarum [AAWO]
45238
45312
+
Gly
GCC
[ENA]
¡û
>W09132202
ACNP01000018
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
28325
28399
+
Gly
GCC
[ENA]
¡û
>W141803152
JPGK01000004
Nitrospirota
Leptospirillum ferriphilum [JPGK]
46033
46107
+
Gly
GCC
[ENA]
¡û
>W1910731513
MHEQ01000185
Nitrospirota
Nitrospirae bacterium RIFCSPHIGHO2_02_FULL_42_12 [MHEQ]
403
329
-
Gly
GCC
[ENA]
¡û
>W1910731526
MHER01000099
Nitrospirota
Nitrospirae bacterium RIFCSPLOW2_12_42_9 [MHER]
2354
2280
-
Gly
GCC
[ENA]
¡û
>W1911494705
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
939393
939467
+
Gly
GCC
[ENA]
¡û
>C151019630
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
1840639
1840713
+
Gly
GCC
[Ensembl]
¡û
>ENV09001950
ACXJ01000185
Mine drainage metagenome Contig1
329
403
+
Gly
GCC
[ENA]
¡û
>ENV09002034
ACXJ01007354
Mine drainage metagenome Contig1
1508
1434
-
Gly
GCC
[ENA]
¡û
>ENV09002249
ACXJ01012082
Mine drainage metagenome Contig1
311
385
+
Gly
GCC
[ENA]
¡û
>ENV09002253
ACXJ01012085
Mine drainage metagenome Contig1
189
263
+
Gly
GCC
[ENA]
¡û
>W1511705764
LGSH01000058
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
29242
29168
-
Gly
GCC
[ENA]
¡û
>C121001291
AP012342
Nitrospirota
Leptospirillum ferrooxidans C2-3 [AP012342]
127683
127757
+
Gly
GCC
[Ensembl]
¡û
>W121055925
AIJM01000086
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
31440
31366
-
Gly
GCC
[ENA]
¡û
>C131001617
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1911415
1911489
+
Gly
GCC
[Ensembl]
¡û
>WENV077002
AADL01000096
Acid Mine Drainage microbial communities from Richmond mine
833
907
+
Gly
GCC
[ENA]
>WENV080249
AAWO01000040
Acid Mine Drainage microbial communities from Richmond mine
45238
45312
+
Gly
GCC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK