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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = GCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.304173 (7 seq.)
>A171003621
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
642845
642918
+
Arg
GCG
-
¡û
>A171006625
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1507289
1507362
+
Arg
GCG
-
¡û
>W141000052
AADL01001111
Unclassified
mine drainage metagenome Group III [AADL]
2705
2778
+
Arg
GCG
[ENA]
¡û
>W141000090
AADL01001524
Unclassified
mine drainage metagenome Group III [AADL]
7652
7579
-
Arg
GCG
[ENA]
¡û
>W1610000061
AABC05000009
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
180003
180076
+
Arg
GCG
[ENA]
¡û
>WENV077060
AADL01001111
Acid Mine Drainage microbial communities from Richmond mine
2705
2781
+
Arg
GCG
[ENA]
>WENV077098
AADL01001524
Acid Mine Drainage microbial communities from Richmond mine
7652
7576
-
Arg
GCG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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