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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = GCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12231 (12 seq.)
>W1711628730
MPOJ01000030
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
13862
13954
+
Ser
GCT
[ENA]
¡û
>W1711628744
MPOK01000005
Nitrospirota
Leptospirillum ferriphilum [MPOK]
13836
13928
+
Ser
GCT
[ENA]
¡û
>W141000197
AADL01002506
Unclassified
mine drainage metagenome Group III [AADL]
23908
23816
-
Ser
GCT
[ENA]
¡û
>W09106649
AAWO01000060
Unclassified
mine drainage metagenome rubarum [AAWO]
61954
61862
-
Ser
GCT
[ENA]
¡û
>W141803133
JPGK01000001
Nitrospirota
Leptospirillum ferriphilum [JPGK]
135235
135327
+
Ser
GCT
[ENA]
¡û
>W1911494712
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
1615973
1616065
+
Ser
GCT
[ENA]
¡û
>C151019616
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
173197
173289
+
Ser
GCT
[Ensembl]
¡û
>C151091646
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
181838
181930
+
Ser
GCT
[Ensembl]
¡û
>W121055919
AIJM01000073
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
6430
6338
-
Ser
GCT
[ENA]
¡û
>C131001602
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
168058
168150
+
Ser
GCT
[Ensembl]
¡û
>WENV076993
AADL01000050
Acid Mine Drainage microbial communities from Richmond mine
15081
15175
+
Ser
GCT
[ENA]
>WENV080264
AAWO01000060
Acid Mine Drainage microbial communities from Richmond mine
61955
61861
-
Ser
GCT
[ENA]
Identical group No.158039 (9 seq.)
>A171003617
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
335106
335190
+
Ser
GCT
-
¡û
>A171006621
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1222986
1223070
+
Ser
GCT
-
¡û
>W141000063
AADL01001315
Unclassified
mine drainage metagenome Group III [AADL]
433
517
+
Ser
GCT
[ENA]
¡û
>W141000088
AADL01001522
Unclassified
mine drainage metagenome Group III [AADL]
39559
39475
-
Ser
GCT
[ENA]
¡û
>W141000107
AADL01001635
Unclassified
mine drainage metagenome Group III [AADL]
14443
14527
+
Ser
GCT
[ENA]
¡û
>W1610000056
AABC05000008
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
98598
98682
+
Ser
GCT
[ENA]
¡û
>WENV077071
AADL01001315
Acid Mine Drainage microbial communities from Richmond mine
433
520
+
Ser
GCT
[ENA]
>WENV077096
AADL01001522
Acid Mine Drainage microbial communities from Richmond mine
39559
39472
-
Ser
GCT
[ENA]
>WENV077115
AADL01001635
Acid Mine Drainage microbial communities from Richmond mine
14443
14530
+
Ser
GCT
[ENA]
Identical group No.158041 (5 seq.)
>A171007738
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1065003
1065088
+
Ser
GCT
-
¡û
>A171007775
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1068436
1068521
+
Ser
GCT
-
¡û
>W141000126
AADL01001777
Unclassified
mine drainage metagenome Group III [AADL]
527
612
+
Ser
GCT
[ENA]
¡û
>ENV09002269
ACXJ01012553
Mine drainage metagenome Contig1
534
619
+
Ser
GCT
[ENA]
¡û
>WENV077134
AADL01001777
Acid Mine Drainage microbial communities from Richmond mine
527
614
+
Ser
GCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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