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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = GGA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12230 (13 seq.)
>W1711628731
MPOJ01000030
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
19493
19401
-
Ser
GGA
[ENA]
¡û
>W1711628746
MPOK01000005
Nitrospirota
Leptospirillum ferriphilum [MPOK]
19467
19375
-
Ser
GGA
[ENA]
¡û
>W141000193
AADL01002506
Unclassified
mine drainage metagenome Group III [AADL]
18280
18372
+
Ser
GGA
[ENA]
¡û
>W09106646
AAWO01000060
Unclassified
mine drainage metagenome rubarum [AAWO]
56323
56415
+
Ser
GGA
[ENA]
¡û
>W141803139
JPGK01000001
Nitrospirota
Leptospirillum ferriphilum [JPGK]
140863
140771
-
Ser
GGA
[ENA]
¡û
>W1911494728
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
1621601
1621509
-
Ser
GGA
[ENA]
¡û
>C151019656
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
178828
178736
-
Ser
GGA
[Ensembl]
¡û
>C151091687
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
187469
187377
-
Ser
GGA
[Ensembl]
¡û
>W1511705748
LGSH01000041
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
22087
22179
+
Ser
GGA
[ENA]
¡û
>W121055916
AIJM01000073
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
799
891
+
Ser
GGA
[ENA]
¡û
>C131001643
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
173689
173597
-
Ser
GGA
[Ensembl]
¡û
>WENV076994
AADL01000050
Acid Mine Drainage microbial communities from Richmond mine
20711
20617
-
Ser
GGA
[ENA]
>WENV080263
AAWO01000060
Acid Mine Drainage microbial communities from Richmond mine
56322
56416
+
Ser
GGA
[ENA]
Identical group No.13635 (4 seq.)
>W141000004
AADL01000228
Unclassified
mine drainage metagenome Group III [AADL]
5239
5147
-
Ser
GGA
[ENA]
¡û
>W09132212
ACNP01000058
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
6333
6425
+
Ser
GGA
[ENA]
¡û
>ENV09002241
ACXJ01011403
Mine drainage metagenome Contig1
8597
8505
-
Ser
GGA
[ENA]
¡û
>WENV077012
AADL01000228
Acid Mine Drainage microbial communities from Richmond mine
5240
5146
-
Ser
GGA
[ENA]
Identical group No.119158 (7 seq.)
>A171003630
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1793026
1793110
+
Ser
GGA
-
¡û
>A171006618
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
754596
754680
+
Ser
GGA
-
¡û
>W141000051
AADL01001102
Unclassified
mine drainage metagenome Group III [AADL]
2857
2941
+
Ser
GGA
[ENA]
¡û
>W141000083
AADL01001503
Unclassified
mine drainage metagenome Group III [AADL]
21561
21645
+
Ser
GGA
[ENA]
¡û
>W1610000081
AABC05000015
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
56622
56706
+
Ser
GGA
[ENA]
¡û
>WENV077059
AADL01001102
Acid Mine Drainage microbial communities from Richmond mine
2857
2943
+
Ser
GGA
[ENA]
>WENV077092
AADL01001503
Acid Mine Drainage microbial communities from Richmond mine
21561
21647
+
Ser
GGA
[ENA]
Identical group No.158040 (4 seq.)
>A171007748
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1813568
1813485
-
Ser
GGA
-
¡û
>A171007785
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1758366
1758283
-
Ser
GGA
-
¡û
>W141000115
AADL01001671
Unclassified
mine drainage metagenome Group III [AADL]
1663
1580
-
Ser
GGA
[ENA]
¡û
>WENV077123
AADL01001671
Acid Mine Drainage microbial communities from Richmond mine
1663
1578
-
Ser
GGA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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