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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = GGC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451316 (16 seq.)
>W1711628705
MPOJ01000009
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
26704
26629
-
Ala
GGC
[ENA]
¡û
>W1711628763
MPOK01000062
Nitrospirota
Leptospirillum ferriphilum [MPOK]
28055
28130
+
Ala
GGC
[ENA]
¡û
>W141000031
AADL01000760
Unclassified
mine drainage metagenome Group III [AADL]
448
373
-
Ala
GGC
[ENA]
¡û
>W141000166
AADL01002462
Unclassified
mine drainage metagenome Group III [AADL]
83832
83757
-
Ala
GGC
[ENA]
¡û
>W09106619
AAWO01000003
Unclassified
mine drainage metagenome rubarum [AAWO]
178414
178339
-
Ala
GGC
[ENA]
¡û
>W141803147
JPGK01000003
Nitrospirota
Leptospirillum ferriphilum [JPGK]
246546
246621
+
Ala
GGC
[ENA]
¡û
>W1911494717
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
2104103
2104178
+
Ala
GGC
[ENA]
¡û
>C151019620
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
686090
686165
+
Ala
GGC
[Ensembl]
¡û
>C151091674
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
1831218
1831143
-
Ala
GGC
[Ensembl]
¡û
>W1511705739
LGSH01000031
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
39545
39470
-
Ala
GGC
[ENA]
¡û
>C121001321
AP012342
Nitrospirota
Leptospirillum ferrooxidans C2-3 [AP012342]
1776592
1776517
-
Ala
GGC
[Ensembl]
¡û
>W121055880
AIJM01000002
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
129154
129079
-
Ala
GGC
[ENA]
¡û
>C131001607
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
808919
808994
+
Ala
GGC
[Ensembl]
¡û
>WENV076967
AADL01000001
Acid Mine Drainage microbial communities from Richmond mine
82711
82634
-
Ala
GGC
[ENA]
>WENV077039
AADL01000760
Acid Mine Drainage microbial communities from Richmond mine
449
372
-
Ala
GGC
[ENA]
>WENV080238
AAWO01000003
Acid Mine Drainage microbial communities from Richmond mine
178415
178338
-
Ala
GGC
[ENA]
Identical group No.674647 (9 seq.)
>A171003631
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1676285
1676214
-
Ala
GGC
-
¡û
>A171006635
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
626516
626445
-
Ala
GGC
-
¡û
>W141000057
AADL01001227
Unclassified
mine drainage metagenome Group III [AADL]
626
555
-
Ala
GGC
[ENA]
¡û
>W141000073
AADL01001492
Unclassified
mine drainage metagenome Group III [AADL]
5598
5669
+
Ala
GGC
[ENA]
¡û
>W141000143
AADL01002036
Unclassified
mine drainage metagenome Group III [AADL]
700
628
-
Ala
GGC
[ENA]
¡û
>W1610000077
AABC05000014
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
332167
332096
-
Ala
GGC
[ENA]
¡û
>WENV077065
AADL01001227
Acid Mine Drainage microbial communities from Richmond mine
626
552
-
Ala
GGC
[ENA]
>WENV077081
AADL01001492
Acid Mine Drainage microbial communities from Richmond mine
5598
5672
+
Ala
GGC
[ENA]
>WENV077151
AADL01002036
Acid Mine Drainage microbial communities from Richmond mine
700
626
-
Ala
GGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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