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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = GGG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270377 (14 seq.)
>W1711628725
MPOJ01000018
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
41647
41571
-
Pro
GGG
[ENA]
¡û
>W1711628734
MPOK01000001
Nitrospirota
Leptospirillum ferriphilum [MPOK]
56105
56181
+
Pro
GGG
[ENA]
¡û
>W141000175
AADL01002492
Unclassified
mine drainage metagenome Group III [AADL]
92884
92808
-
Pro
GGG
[ENA]
¡û
>W09106657
AAWO01000078
Unclassified
mine drainage metagenome rubarum [AAWO]
10983
11059
+
Pro
GGG
[ENA]
¡û
>W141803160
JPGK01000006
Nitrospirota
Leptospirillum ferriphilum [JPGK]
105992
106068
+
Pro
GGG
[ENA]
¡û
>W1911494700
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
273880
273956
+
Pro
GGG
[ENA]
¡û
>C151019625
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
1161999
1162075
+
Pro
GGG
[Ensembl]
¡û
>C151091679
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
1369404
1369328
-
Pro
GGG
[Ensembl]
¡û
>W1511705766
LGSH01000069
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
57096
57172
+
Pro
GGG
[ENA]
¡û
>C121001309
AP012342
Nitrospirota
Leptospirillum ferrooxidans C2-3 [AP012342]
1143192
1143268
+
Pro
GGG
[Ensembl]
¡û
>W121055890
AIJM01000010
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
60947
60871
-
Pro
GGG
[ENA]
¡û
>C131001612
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1227047
1227123
+
Pro
GGG
[Ensembl]
¡û
>WENV076975
AADL01000014
Acid Mine Drainage microbial communities from Richmond mine
28952
29030
+
Pro
GGG
[ENA]
>WENV080274
AAWO01000078
Acid Mine Drainage microbial communities from Richmond mine
10982
11060
+
Pro
GGG
[ENA]
Identical group No.488096 (4 seq.)
>W141000036
AADL01000852
Unclassified
mine drainage metagenome Group III [AADL]
839
764
-
Pro
GGG
[ENA]
¡û
>ENV09002040
ACXJ01007549
Mine drainage metagenome Contig1
1254
1179
-
Pro
GGG
[ENA]
¡û
>ENV09002302
ACXK01000087
Thermoplasmatales archaeon A-plasma AplasmaContig10144
950
875
-
Pro
GGG
[ENA]
¡û
>WENV077044
AADL01000852
Acid Mine Drainage microbial communities from Richmond mine
839
764
-
Pro
GGG
[ENA]
Identical group No.488113 (4 seq.)
>A171007751
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1427329
1427255
-
Pro
GGG
-
¡û
>A171007788
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1421507
1421433
-
Pro
GGG
-
¡û
>W141000130
AADL01001817
Unclassified
mine drainage metagenome Group III [AADL]
514
440
-
Pseudo
GGG
[ENA]
¡û
>WENV077138
AADL01001817
Acid Mine Drainage microbial communities from Richmond mine
514
437
-
Pro
GGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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