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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = GGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451324 (23 seq.)
>W1711628717
MPOJ01000011
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
81711
81786
+
Thr
GGT
[ENA]
¡û
>W1711628739
MPOK01000002
Nitrospirota
Leptospirillum ferriphilum [MPOK]
47149
47224
+
Thr
GGT
[ENA]
¡û
>W141000018
AADL01000468
Unclassified
mine drainage metagenome Group III [AADL]
553
478
-
Thr
GGT
[ENA]
¡û
>W141000025
AADL01000568
Unclassified
mine drainage metagenome Group III [AADL]
912
837
-
Thr
GGT
[ENA]
¡û
>W141000117
AADL01001679
Unclassified
mine drainage metagenome Group III [AADL]
214
289
+
Thr
GGT
[ENA]
¡û
>W141000181
AADL01002502
Unclassified
mine drainage metagenome Group III [AADL]
14935
14860
-
Thr
GGT
[ENA]
¡û
>WENV170013512
AUZX01013220
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
553
478
-
Thr
GGT
[ENA]
¢þ
>W09106663
AAWO01000082
Unclassified
mine drainage metagenome rubarum [AAWO]
100771
100696
-
Thr
GGT
[ENA]
¡û
>W09132223
ACNP01000065
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
14551
14476
-
Thr
GGT
[ENA]
¡û
>W141803171
JPGK01000011
Nitrospirota
Leptospirillum ferriphilum [JPGK]
257
182
-
Thr
GGT
[ENA]
¡û
>W1911494740
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
606483
606408
-
Thr
GGT
[ENA]
¡û
>C151019643
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
1484165
1484090
-
Thr
GGT
[Ensembl]
¡û
>C151091655
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
988766
988841
+
Thr
GGT
[Ensembl]
¡û
>ENV09001980
ACXJ01003227
Mine drainage metagenome Contig1
695
770
+
Thr
GGT
[ENA]
¡û
>W1511705728
LGSH01000006
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
61032
61107
+
Thr
GGT
[ENA]
¡û
>C121001302
AP012342
Nitrospirota
Leptospirillum ferrooxidans C2-3 [AP012342]
851991
852066
+
Thr
GGT
[Ensembl]
¡û
>W121055901
AIJM01000034
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
32955
33030
+
Thr
GGT
[ENA]
¡û
>C131001630
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1532811
1532736
-
Thr
GGT
[Ensembl]
¡û
>WENV077003
AADL01000098
Acid Mine Drainage microbial communities from Richmond mine
474
399
-
Thr
GGT
[ENA]
>WENV077024
AADL01000468
Acid Mine Drainage microbial communities from Richmond mine
553
478
-
Thr
GGT
[ENA]
>WENV077032
AADL01000568
Acid Mine Drainage microbial communities from Richmond mine
912
837
-
Thr
GGT
[ENA]
>WENV077125
AADL01001679
Acid Mine Drainage microbial communities from Richmond mine
214
289
+
Thr
GGT
[ENA]
>WENV080277
AAWO01000082
Acid Mine Drainage microbial communities from Richmond mine
100771
100696
-
Thr
GGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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