This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = GTA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.153682 (14 seq.)
>W1711628715
MPOJ01000011
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
81490
81575
+
Tyr
GTA
[ENA]
¡û
>W1711628737
MPOK01000002
Nitrospirota
Leptospirillum ferriphilum [MPOK]
46928
47013
+
Tyr
GTA
[ENA]
¡û
>W141000179
AADL01002502
Unclassified
mine drainage metagenome Group III [AADL]
15155
15070
-
Tyr
GTA
[ENA]
¡û
>WENV170013510
AUZX01013220
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
759
674
-
Tyr
GTA
[ENA]
¢þ
>W09106661
AAWO01000082
Unclassified
mine drainage metagenome rubarum [AAWO]
100992
100907
-
Tyr
GTA
[ENA]
¡û
>W141803169
JPGK01000011
Nitrospirota
Leptospirillum ferriphilum [JPGK]
477
392
-
Tyr
GTA
[ENA]
¡û
>W1911494738
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
606703
606618
-
Tyr
GTA
[ENA]
¡û
>C151019641
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
1484386
1484301
-
Tyr
GTA
[Ensembl]
¡û
>C151091653
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
988545
988630
+
Tyr
GTA
[Ensembl]
¡û
>W1511705726
LGSH01000006
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
60811
60896
+
Tyr
GTA
[ENA]
¡û
>W121055899
AIJM01000034
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
32734
32819
+
Tyr
GTA
[ENA]
¡û
>C131001628
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1533032
1532947
-
Tyr
GTA
[Ensembl]
¡û
>WENV077005
AADL01000098
Acid Mine Drainage microbial communities from Richmond mine
695
608
-
Tyr
GTA
[ENA]
>WENV080279
AAWO01000082
Acid Mine Drainage microbial communities from Richmond mine
100993
100906
-
Tyr
GTA
[ENA]
Identical group No.186808 (4 seq.)
>W141000016
AADL01000468
Unclassified
mine drainage metagenome Group III [AADL]
768
684
-
Tyr
GTA
[ENA]
¡û
>W09132221
ACNP01000065
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
14766
14682
-
Tyr
GTA
[ENA]
¡û
>ENV09001978
ACXJ01003227
Mine drainage metagenome Contig1
480
564
+
Tyr
GTA
[ENA]
¡û
>WENV077026
AADL01000468
Acid Mine Drainage microbial communities from Richmond mine
768
684
-
Tyr
GTA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK