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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = GTC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270371 (14 seq.)
>W1711628693
MPOJ01000002
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
25161
25085
-
Asp
GTC
[ENA]
¡û
>W1711628766
MPOK01000065
Nitrospirota
Leptospirillum ferriphilum [MPOK]
80744
80820
+
Asp
GTC
[ENA]
¡û
>W141000170
AADL01002490
Unclassified
mine drainage metagenome Group III [AADL]
35492
35568
+
Asp
GTC
[ENA]
¡û
>W09106627
AAWO01000016
Unclassified
mine drainage metagenome rubarum [AAWO]
21519
21595
+
Asp
GTC
[ENA]
¡û
>W141803157
JPGK01000005
Nitrospirota
Leptospirillum ferriphilum [JPGK]
17104
17180
+
Asp
GTC
[ENA]
¡û
>W1911494720
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
2389292
2389368
+
Asp
GTC
[ENA]
¡û
>C151019623
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
975636
975712
+
Asp
GTC
[Ensembl]
¡û
>C151091677
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
1545418
1545342
-
Asp
GTC
[Ensembl]
¡û
>W1511705736
LGSH01000024
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
5182
5106
-
Asp
GTC
[ENA]
¡û
>C121001324
AP012342
Nitrospirota
Leptospirillum ferrooxidans C2-3 [AP012342]
1293917
1293841
-
Asp
GTC
[Ensembl]
¡û
>W121055909
AIJM01000055
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
20863
20787
-
Asp
GTC
[ENA]
¡û
>C131001610
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1091725
1091801
+
Asp
GTC
[Ensembl]
¡û
>WENV076995
AADL01000070
Acid Mine Drainage microbial communities from Richmond mine
589
667
+
Asp
GTC
[ENA]
>WENV080245
AAWO01000016
Acid Mine Drainage microbial communities from Richmond mine
21518
21596
+
Asp
GTC
[ENA]
Identical group No.488106 (10 seq.)
>A171003628
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1684877
1684950
+
Asp
GTC
-
¡û
>A171006616
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
635108
635181
+
Asp
GTC
-
¡û
>W141000071
AADL01001490
Unclassified
mine drainage metagenome Group III [AADL]
3824
3749
-
Asp
GTC
[ENA]
¡û
>W141000072
AADL01001491
Unclassified
mine drainage metagenome Group III [AADL]
211
137
-
Asp
GTC
[ENA]
¡û
>W141000147
AADL01002079
Unclassified
mine drainage metagenome Group III [AADL]
1141
1215
+
Asp
GTC
[ENA]
¡û
>ENV09002309
ACXL01000008
Thermoplasmatales archaeon E-plasma EplasmaContig2057
156425
156350
-
Asp
GTC
[ENA]
¡û
>W1610000076
AABC05000014
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
340759
340832
+
Asp
GTC
[ENA]
¡û
>WENV077079
AADL01001490
Acid Mine Drainage microbial communities from Richmond mine
3824
3747
-
Asp
GTC
[ENA]
>WENV077080
AADL01001491
Acid Mine Drainage microbial communities from Richmond mine
211
134
-
Asp
GTC
[ENA]
>WENV077155
AADL01002079
Acid Mine Drainage microbial communities from Richmond mine
1141
1218
+
Asp
GTC
[ENA]
Identical group No.488114 (5 seq.)
>A171007742
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1218495
1218567
+
Asp
GTC
-
¡û
>A171007779
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1221318
1221390
+
Asp
GTC
-
¡û
>W141000139
AADL01001966
Unclassified
mine drainage metagenome Group III [AADL]
3014
2939
-
Asp
GTC
[ENA]
¡û
>ENV09002059
ACXJ01008428
Mine drainage metagenome Contig1
600
675
+
Asp
GTC
[ENA]
¡û
>WENV077147
AADL01001966
Acid Mine Drainage microbial communities from Richmond mine
3014
2939
-
Asp
GTC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK