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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = GTT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451318 (15 seq.)
>W1711628699
MPOJ01000005
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
64083
64008
-
Asn
GTT
[ENA]
¡û
>W1711628741
MPOK01000003
Nitrospirota
Leptospirillum ferriphilum [MPOK]
29300
29375
+
Asn
GTT
[ENA]
¡û
>W141000209
AADL01002520
Unclassified
mine drainage metagenome Group III [AADL]
4384
4459
+
Asn
GTT
[ENA]
¡û
>W09106631
AAWO01000040
Unclassified
mine drainage metagenome rubarum [AAWO]
28401
28476
+
Asn
GTT
[ENA]
¡û
>W141803151
JPGK01000004
Nitrospirota
Leptospirillum ferriphilum [JPGK]
29249
29324
+
Asn
GTT
[ENA]
¡û
>W1911494704
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
922609
922684
+
Asn
GTT
[ENA]
¡û
>C151019629
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
1823803
1823878
+
Asn
GTT
[Ensembl]
¡û
>C151091664
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
2082289
2082364
+
Asn
GTT
[Ensembl]
¡û
>ENV09001960
ACXJ01000915
Mine drainage metagenome Contig1
553
478
-
Asn
GTT
[ENA]
¡û
>W1511705763
LGSH01000058
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
46077
46002
-
Asn
GTT
[ENA]
¡û
>C121001331
AP012342
Nitrospirota
Leptospirillum ferrooxidans C2-3 [AP012342]
619539
619464
-
Asn
GTT
[Ensembl]
¡û
>W121055924
AIJM01000086
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
48277
48202
-
Asn
GTT
[ENA]
¡û
>C131001616
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1893502
1893577
+
Asn
GTT
[Ensembl]
¡û
>WENV076997
AADL01000072
Acid Mine Drainage microbial communities from Richmond mine
4337
4414
+
Asn
GTT
[ENA]
>WENV080248
AAWO01000040
Acid Mine Drainage microbial communities from Richmond mine
28400
28477
+
Asn
GTT
[ENA]
Identical group No.488099 (9 seq.)
>A171003640
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
624698
624626
-
Asn
GTT
-
¡û
>A171006632
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1489141
1489069
-
Asn
GTT
-
¡û
>W141000048
AADL01001092
Unclassified
mine drainage metagenome Group III [AADL]
8499
8571
+
Asn
GTT
[ENA]
¡û
>W141000132
AADL01001881
Unclassified
mine drainage metagenome Group III [AADL]
1170
1098
-
Asn
GTT
[ENA]
¡û
>W141000156
AADL01002346
Unclassified
mine drainage metagenome Group III [AADL]
519
591
+
Asn
GTT
[ENA]
¡û
>W1610000063
AABC05000009
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
161856
161784
-
Asn
GTT
[ENA]
¡û
>WENV077056
AADL01001092
Acid Mine Drainage microbial communities from Richmond mine
8499
8574
+
Asn
GTT
[ENA]
>WENV077141
AADL01001881
Acid Mine Drainage microbial communities from Richmond mine
1170
1095
-
Asn
GTT
[ENA]
>WENV077164
AADL01002346
Acid Mine Drainage microbial communities from Richmond mine
519
594
+
Asn
GTT
[ENA]
Identical group No.488112 (5 seq.)
>A171007740
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1194159
1194231
+
Asn
GTT
-
¡û
>A171007777
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1196777
1196849
+
Asn
GTT
-
¡û
>W141000127
AADL01001785
Unclassified
mine drainage metagenome Group III [AADL]
1496
1424
-
Asn
GTT
[ENA]
¡û
>ENV09002218
ACXJ01011277
Mine drainage metagenome Contig1
286
358
+
Asn
GTT
[ENA]
¡û
>WENV077136
AADL01001785
Acid Mine Drainage microbial communities from Richmond mine
1496
1421
-
Asn
GTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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