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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = TAA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.91060 (5 seq.)
>A171003620
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
639409
639493
+
Leu
TAA
-
¡û
>A171006624
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1503853
1503937
+
Leu
TAA
-
¡û
>W141000085
AADL01001513
Unclassified
mine drainage metagenome Group III [AADL]
2916
2830
-
Leu
TAA
[ENA]
¡û
>W1610000060
AABC05000009
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
176567
176651
+
Leu
TAA
[ENA]
¡û
>WENV077093
AADL01001513
Acid Mine Drainage microbial communities from Richmond mine
2916
2827
-
Leu
TAA
[ENA]
Identical group No.91061 (5 seq.)
>A171007731
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
616186
616270
+
Leu
TAA
-
¡û
>A171007768
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
606354
606438
+
Leu
TAA
-
¡û
>W141000102
AADL01001624
Unclassified
mine drainage metagenome Group III [AADL]
857
941
+
Leu
TAA
[ENA]
¡û
>ENV09002259
ACXJ01012236
Mine drainage metagenome Contig1
7322
7406
+
Leu
TAA
[ENA]
¡û
>WENV077110
AADL01001624
Acid Mine Drainage microbial communities from Richmond mine
857
944
+
Leu
TAA
[ENA]
Identical group No.112232 (3 seq.)
>W09106635
AAWO01000047
Unclassified
mine drainage metagenome rubarum [AAWO]
53276
53362
+
Leu
TAA
[ENA]
¡û
>ENV09002183
ACXJ01010946
Mine drainage metagenome Contig1
3668
3754
+
Leu
TAA
[ENA]
¡û
>WENV080253
AAWO01000047
Acid Mine Drainage microbial communities from Richmond mine
53275
53363
+
Leu
TAA
[ENA]
Identical group No.119160 (4 seq.)
>W141000208
AADL01002518
Unclassified
mine drainage metagenome Group III [AADL]
20481
20395
-
Leu
TAA
[ENA]
¡û
>C151091667
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
2320283
2320369
+
Leu
TAA
[Ensembl]
¡û
>W121055886
AIJM01000005
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
10017
9931
-
Leu
TAA
[ENA]
¡û
>WENV076983
AADL01000023
Acid Mine Drainage microbial communities from Richmond mine
40004
40092
+
Leu
TAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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