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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = TAC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451317 (13 seq.)
>W1711628690
MPOJ01000002
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
25758
25833
+
Val
TAC
[ENA]
¡û
>W1711628768
MPOK01000065
Nitrospirota
Leptospirillum ferriphilum [MPOK]
80147
80072
-
Val
TAC
[ENA]
¡û
>W141000172
AADL01002490
Unclassified
mine drainage metagenome Group III [AADL]
34897
34822
-
Val
TAC
[ENA]
¡û
>W09106629
AAWO01000016
Unclassified
mine drainage metagenome rubarum [AAWO]
20922
20847
-
Val
TAC
[ENA]
¡û
>W141803159
JPGK01000005
Nitrospirota
Leptospirillum ferriphilum [JPGK]
16509
16434
-
Val
TAC
[ENA]
¡û
>W1911494722
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
2388697
2388622
-
Val
TAC
[ENA]
¡û
>C151019650
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
975039
974964
-
Val
TAC
[Ensembl]
¡û
>C151091662
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
1546015
1546090
+
Val
TAC
[Ensembl]
¡û
>W1511705735
LGSH01000024
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
5779
5854
+
Val
TAC
[ENA]
¡û
>W121055908
AIJM01000055
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
21460
21535
+
Val
TAC
[ENA]
¡û
>C131001637
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1091128
1091053
-
Val
TAC
[Ensembl]
¡û
>WENV076986
AADL01000037
Acid Mine Drainage microbial communities from Richmond mine
34853
34778
-
Val
TAC
[ENA]
>WENV080244
AAWO01000016
Acid Mine Drainage microbial communities from Richmond mine
20922
20847
-
Val
TAC
[ENA]
Identical group No.470999 (32 seq.)
>A171007758
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
562082
562010
-
Val
TAC
-
¡û
>A171007795
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
560422
560349
-
Val
TAC
-
¡û
>W141000080
AADL01001502
Unclassified
mine drainage metagenome Group III [AADL]
59348
59276
-
Val
TAC
[ENA]
¡û
>W141000112
AADL01001651
Unclassified
mine drainage metagenome Group III [AADL]
705
633
-
Val
TAC
[ENA]
¡û
>W141000121
AADL01001728
Unclassified
mine drainage metagenome Group III [AADL]
891
963
+
Val
TAC
[ENA]
¡û
>W141000141
AADL01001991
Unclassified
mine drainage metagenome Group III [AADL]
4467
4394
-
Val
TAC
[ENA]
¡û
>WENV180343181
OBLK01000084
[OBLK] soil metagenome; Clay
74
2
-
Val
TAC
[ENA]
¢þ
>WENV181291733
OFHC01009749
[OFHC] soil metagenome; Clay
106
179
+
Val
TAC
[ENA]
¢þ
>WENV181292294
OFHE01000039
[OFHE] soil metagenome; Clay
17680
17753
+
Val
TAC
[ENA]
¢þ
>WENV181292368
OFHE01002796
[OFHE] soil metagenome; Clay
600
672
+
Val
TAC
[ENA]
¢þ
>WENV181295032
OFHI01000013
[OFHI] soil metagenome; Clay
9716
9789
+
Val
TAC
[ENA]
¢þ
>WENV181295075
OFHI01000087
[OFHI] soil metagenome; Clay
21185
21257
+
Val
TAC
[ENA]
¢þ
>WENV181295143
OFHI01001227
[OFHI] soil metagenome; Clay
876
949
+
Val
TAC
[ENA]
¢þ
>WENV181295634
OFHJ01000034
[OFHJ] soil metagenome; Clay
16747
16675
-
Val
TAC
[ENA]
¢þ
>WENV181295738
OFHJ01000352
[OFHJ] soil metagenome; Clay
13955
13882
-
Val
TAC
[ENA]
¢þ
>WENV181295845
OFHJ01001125
[OFHJ] soil metagenome; Clay
7858
7786
-
Val
TAC
[ENA]
¢þ
>WENV181296541
OFHJ01055895
[OFHJ] soil metagenome; Clay
260
188
-
Val
TAC
[ENA]
¢þ
>W1910585066
JYHS01000001
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
346890
346963
+
Val
TAC
[ENA]
¡û
>ENV09001967
ACXJ01002138
Mine drainage metagenome Contig1
1028
955
-
Val
TAC
[ENA]
¡û
>ENV09001987
ACXJ01004050
Mine drainage metagenome Contig1
467
539
+
Val
TAC
[ENA]
¡û
>ENV09002199
ACXJ01011098
Mine drainage metagenome Contig1
1184
1111
-
Val
TAC
[ENA]
¡û
>ENV09002260
ACXJ01012237
Mine drainage metagenome Contig1
1616
1543
-
Val
TAC
[ENA]
¡û
>ENV09002284
ACXK01000057
Thermoplasmatales archaeon A-plasma AplasmaContig10144
105878
105951
+
Val
TAC
[ENA]
¡û
>ENV09002331
ACXL01000017
Thermoplasmatales archaeon E-plasma EplasmaContig2057
79633
79561
-
Val
TAC
[ENA]
¡û
>W1610047601
BBDK01000031
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
2181
2106
-
Val
TAC
[ENA]
¡û
>W1610642303
LJCQ01000179
Unclassified
Acidiplasma aeolicum V [LJCQ]
3865
3792
-
Val
TAC
[ENA]
¡û
>W1610670456
LKBG01000078
Unclassified
Acidiplasma aeolicum VT [LKBG]
15147
15220
+
Val
TAC
[ENA]
¡û
>W1610670491
LKBH01000045
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
2179
2104
-
Val
TAC
[ENA]
¡û
>WENV077089
AADL01001502
Acid Mine Drainage microbial communities from Richmond mine
59348
59273
-
Val
TAC
[ENA]
>WENV077120
AADL01001651
Acid Mine Drainage microbial communities from Richmond mine
705
630
-
Val
TAC
[ENA]
>WENV077129
AADL01001728
Acid Mine Drainage microbial communities from Richmond mine
891
966
+
Val
TAC
[ENA]
>WENV077149
AADL01001991
Acid Mine Drainage microbial communities from Richmond mine
4467
4392
-
Val
TAC
[ENA]
Identical group No.674640 (2 seq.)
>W141000007
AADL01000270
Unclassified
mine drainage metagenome Group III [AADL]
841
915
+
Val
TAC
[ENA]
¡û
>WENV077015
AADL01000270
Acid Mine Drainage microbial communities from Richmond mine
841
915
+
Val
TAC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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