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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = TCC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.488107 (7 seq.)
>A171003626
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1057550
1057622
+
Gly
TCC
-
¡û
>A171006614
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
88186
88258
+
Gly
TCC
-
¡û
>W141000091
AADL01001526
Unclassified
mine drainage metagenome Group III [AADL]
31058
31131
+
Gly
TCC
[ENA]
¡û
>W141000119
AADL01001693
Unclassified
mine drainage metagenome Group III [AADL]
1867
1795
-
Gly
TCC
[ENA]
¡û
>W1610000070
AABC05000011
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
184616
184688
+
Gly
TCC
[ENA]
¡û
>WENV077099
AADL01001526
Acid Mine Drainage microbial communities from Richmond mine
31058
31133
+
Gly
TCC
[ENA]
>WENV077127
AADL01001693
Acid Mine Drainage microbial communities from Richmond mine
1867
1792
-
Gly
TCC
[ENA]
Identical group No.653330 (15 seq.)
>W1711628716
MPOJ01000011
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
81613
81687
+
Gly
TCC
[ENA]
¡û
>W1711628738
MPOK01000002
Nitrospirota
Leptospirillum ferriphilum [MPOK]
47051
47125
+
Gly
TCC
[ENA]
¡û
>W141000116
AADL01001679
Unclassified
mine drainage metagenome Group III [AADL]
116
190
+
Gly
TCC
[ENA]
¡û
>W141000180
AADL01002502
Unclassified
mine drainage metagenome Group III [AADL]
15033
14959
-
Gly
TCC
[ENA]
¡û
>W09106662
AAWO01000082
Unclassified
mine drainage metagenome rubarum [AAWO]
100869
100795
-
Gly
TCC
[ENA]
¡û
>W141803170
JPGK01000011
Nitrospirota
Leptospirillum ferriphilum [JPGK]
355
281
-
Gly
TCC
[ENA]
¡û
>W1911494739
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
606581
606507
-
Gly
TCC
[ENA]
¡û
>C151019642
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
1484263
1484189
-
Gly
TCC
[Ensembl]
¡û
>C151091654
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
988668
988742
+
Gly
TCC
[Ensembl]
¡û
>W1511705727
LGSH01000006
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
60934
61008
+
Gly
TCC
[ENA]
¡û
>W121055900
AIJM01000034
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
32857
32931
+
Gly
TCC
[ENA]
¡û
>C131001629
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1532909
1532835
-
Gly
TCC
[Ensembl]
¡û
>WENV077004
AADL01000098
Acid Mine Drainage microbial communities from Richmond mine
572
498
-
Gly
TCC
[ENA]
>WENV077124
AADL01001679
Acid Mine Drainage microbial communities from Richmond mine
116
190
+
Gly
TCC
[ENA]
>WENV080278
AAWO01000082
Acid Mine Drainage microbial communities from Richmond mine
100869
100795
-
Gly
TCC
[ENA]
Identical group No.674641 (6 seq.)
>W141000017
AADL01000468
Unclassified
mine drainage metagenome Group III [AADL]
653
579
-
Gly
TCC
[ENA]
¡û
>W141000024
AADL01000568
Unclassified
mine drainage metagenome Group III [AADL]
1012
938
-
Gly
TCC
[ENA]
¡û
>W09132222
ACNP01000065
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
14651
14577
-
Gly
TCC
[ENA]
¡û
>ENV09001979
ACXJ01003227
Mine drainage metagenome Contig1
595
669
+
Gly
TCC
[ENA]
¡û
>WENV077025
AADL01000468
Acid Mine Drainage microbial communities from Richmond mine
653
579
-
Gly
TCC
[ENA]
>WENV077033
AADL01000568
Acid Mine Drainage microbial communities from Richmond mine
1012
938
-
Gly
TCC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK