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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = TCT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270370 (14 seq.)
>W1711628710
MPOJ01000010
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
245886
245810
-
Arg
TCT
[ENA]
¡û
>W1711628753
MPOK01000011
Nitrospirota
Leptospirillum ferriphilum [MPOK]
997
921
-
Arg
TCT
[ENA]
¡û
>W141000162
AADL01002460
Unclassified
mine drainage metagenome Group III [AADL]
32576
32500
-
Arg
TCT
[ENA]
¡û
>W09106623
AAWO01000006
Unclassified
mine drainage metagenome rubarum [AAWO]
39506
39582
+
Arg
TCT
[ENA]
¡û
>W141803149
JPGK01000003
Nitrospirota
Leptospirillum ferriphilum [JPGK]
60378
60302
-
Arg
TCT
[ENA]
¡û
>W1911494724
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
1917933
1917857
-
Arg
TCT
[ENA]
¡û
>C151019652
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
486645
486569
-
Arg
TCT
[Ensembl]
¡û
>C151091683
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
624930
624854
-
Arg
TCT
[Ensembl]
¡û
>W1511705741
LGSH01000036
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
4501
4577
+
Arg
TCT
[ENA]
¡û
>W121055906
AIJM01000053
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
38373
38449
+
Arg
TCT
[ENA]
¡û
>C131001639
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
547406
547330
-
Arg
TCT
[Ensembl]
¡û
>WENV076985
AADL01000034
Acid Mine Drainage microbial communities from Richmond mine
185
109
-
Arg
TCT
[ENA]
>WENV077007
AADL01000101
Acid Mine Drainage microbial communities from Richmond mine
8657
8733
+
Arg
TCT
[ENA]
>WENV080240
AAWO01000006
Acid Mine Drainage microbial communities from Richmond mine
39506
39582
+
Arg
TCT
[ENA]
Identical group No.304166 (3 seq.)
>W141000010
AADL01000383
Unclassified
mine drainage metagenome Group III [AADL]
259
183
-
Arg
TCT
[ENA]
¡û
>W09132226
ACNP01000070
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
6268
6344
+
Arg
TCT
[ENA]
¡û
>WENV077018
AADL01000383
Acid Mine Drainage microbial communities from Richmond mine
259
183
-
Arg
TCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK