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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = TGA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.153681 (13 seq.)
>W1711628729
MPOJ01000030
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
13758
13843
+
Ser
TGA
[ENA]
¡û
>W1711628743
MPOK01000005
Nitrospirota
Leptospirillum ferriphilum [MPOK]
13732
13817
+
Ser
TGA
[ENA]
¡û
>W141000196
AADL01002506
Unclassified
mine drainage metagenome Group III [AADL]
24024
23939
-
Ser
TGA
[ENA]
¡û
>W09106648
AAWO01000060
Unclassified
mine drainage metagenome rubarum [AAWO]
62058
61973
-
Ser
TGA
[ENA]
¡û
>W141803132
JPGK01000001
Nitrospirota
Leptospirillum ferriphilum [JPGK]
135119
135204
+
Ser
TGA
[ENA]
¡û
>W1911494711
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
1615857
1615942
+
Ser
TGA
[ENA]
¡û
>C151019615
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
173093
173178
+
Ser
TGA
[Ensembl]
¡û
>C151091645
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
181734
181819
+
Ser
TGA
[Ensembl]
¡û
>W1511705752
LGSH01000044
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
25790
25705
-
Ser
TGA
[ENA]
¡û
>W121055918
AIJM01000073
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
6534
6449
-
Ser
TGA
[ENA]
¡û
>C131001601
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
167954
168039
+
Ser
TGA
[Ensembl]
¡û
>WENV076992
AADL01000050
Acid Mine Drainage microbial communities from Richmond mine
14965
15052
+
Ser
TGA
[ENA]
>WENV080265
AAWO01000060
Acid Mine Drainage microbial communities from Richmond mine
62059
61972
-
Ser
TGA
[ENA]
Identical group No.186809 (5 seq.)
>A171007759
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
438577
438494
-
Ser
TGA
-
¡û
>A171007796
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
421281
421198
-
Ser
TGA
-
¡û
>W141000125
AADL01001764
Unclassified
mine drainage metagenome Group III [AADL]
456
373
-
Ser
TGA
[ENA]
¡û
>ENV09002220
ACXJ01011284
Mine drainage metagenome Contig1
12127
12210
+
Ser
TGA
[ENA]
¡û
>WENV077133
AADL01001764
Acid Mine Drainage microbial communities from Richmond mine
456
370
-
Ser
TGA
[ENA]
Identical group No.219820 (7 seq.)
>A171003627
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1460010
1460090
+
Ser
TGA
-
¡û
>A171006615
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
433946
434026
+
Ser
TGA
-
¡û
>W141000043
AADL01001071
Unclassified
mine drainage metagenome Group III [AADL]
3653
3733
+
Ser
TGA
[ENA]
¡û
>W141000068
AADL01001481
Unclassified
mine drainage metagenome Group III [AADL]
24038
24120
+
Ser
TGA
[ENA]
¡û
>W1610000075
AABC05000014
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
115892
115972
+
Ser
TGA
[ENA]
¡û
>WENV077051
AADL01001071
Acid Mine Drainage microbial communities from Richmond mine
3653
3736
+
Ser
TGA
[ENA]
>WENV077076
AADL01001481
Acid Mine Drainage microbial communities from Richmond mine
24038
24123
+
Ser
TGA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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