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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = TGC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451322 (18 seq.)
>W1711628696
MPOJ01000003
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
27169
27244
+
Ala
TGC
[ENA]
¡û
>W1711628757
MPOK01000021
Nitrospirota
Leptospirillum ferriphilum [MPOK]
27163
27238
+
Ala
TGC
[ENA]
¡û
>W141000185
AADL01002504
Unclassified
mine drainage metagenome Group III [AADL]
1944
2019
+
Ala
TGC
[ENA]
¡û
>W141000187
AADL01002504
Unclassified
mine drainage metagenome Group III [AADL]
73247
73172
-
Ala
TGC
[ENA]
¡û
>W09106640
AAWO01000056
Unclassified
mine drainage metagenome rubarum [AAWO]
12998
12923
-
Ala
TGC
[ENA]
¡û
>W1911494702
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
368311
368386
+
Ala
TGC
[ENA]
¡û
>W1911494744
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
439725
439650
-
Ala
TGC
[ENA]
¡û
>C151019627
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
1230867
1230942
+
Ala
TGC
[Ensembl]
¡û
>C151019647
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
1301005
1300930
-
Ala
TGC
[Ensembl]
¡û
>C151091659
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
1165092
1165167
+
Ala
TGC
[Ensembl]
¡û
>C151091681
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
1239428
1239353
-
Ala
TGC
[Ensembl]
¡û
>W1511705733
LGSH01000013
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
2004
2079
+
Ala
TGC
[ENA]
¡û
>W121055892
AIJM01000012
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
17048
17123
+
Ala
TGC
[ENA]
¡û
>W121055913
AIJM01000065
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
32211
32286
+
Ala
TGC
[ENA]
¡û
>C131001614
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1295904
1295979
+
Ala
TGC
[Ensembl]
¡û
>C131001634
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1366088
1366013
-
Ala
TGC
[Ensembl]
¡û
>WENV076998
AADL01000078
Acid Mine Drainage microbial communities from Richmond mine
2203
2128
-
Ala
TGC
[ENA]
>WENV080255
AAWO01000056
Acid Mine Drainage microbial communities from Richmond mine
12998
12923
-
Ala
TGC
[ENA]
Identical group No.488092 (6 seq.)
>W141000020
AADL01000473
Unclassified
mine drainage metagenome Group III [AADL]
2216
2141
-
Ala
TGC
[ENA]
¡û
>W141085068
AURA01000402
Nitrospirota
Leptospirillum sp. Group IV 'UBA BS' [AURA]
1210
1285
+
Ala
TGC
[ENA]
¡û
>W09132218
ACNP01000064
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
20627
20552
-
Ala
TGC
[ENA]
¡û
>ENV09002019
ACXJ01006897
Mine drainage metagenome Contig1
485
560
+
Ala
TGC
[ENA]
¡û
>ENV09002166
ACXJ01010641
Mine drainage metagenome Contig1
1212
1287
+
Ala
TGC
[ENA]
¡û
>WENV077027
AADL01000473
Acid Mine Drainage microbial communities from Richmond mine
2216
2141
-
Ala
TGC
[ENA]
Identical group No.674649 (8 seq.)
>A171007726
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
56252
56323
+
Ala
TGC
-
¡û
>A171007763
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
56252
56323
+
Ala
TGC
-
¡û
>W141000122
AADL01001734
Unclassified
mine drainage metagenome Group III [AADL]
8626
8697
+
Ala
TGC
[ENA]
¡û
>W141000153
AADL01002240
Unclassified
mine drainage metagenome Group III [AADL]
601
672
+
Ala
TGC
[ENA]
¡û
>ENV09002027
ACXJ01007210
Mine drainage metagenome Contig1
1349
1278
-
Ala
TGC
[ENA]
¡û
>ENV09002185
ACXJ01010989
Mine drainage metagenome Contig1
257
186
-
Ala
TGC
[ENA]
¡û
>WENV077130
AADL01001734
Acid Mine Drainage microbial communities from Richmond mine
8626
8700
+
Ala
TGC
[ENA]
>WENV077161
AADL01002240
Acid Mine Drainage microbial communities from Richmond mine
601
675
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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