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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = TGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270376 (14 seq.)
>W1711628721
MPOJ01000016
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
50926
51002
+
Pro
TGG
[ENA]
¡û
>W1711628761
MPOK01000053
Nitrospirota
Leptospirillum ferriphilum [MPOK]
54380
54304
-
Pro
TGG
[ENA]
¡û
>W141000199
AADL01002507
Unclassified
mine drainage metagenome Group III [AADL]
33339
33263
-
Pro
TGG
[ENA]
¡û
>W09106652
AAWO01000061
Unclassified
mine drainage metagenome rubarum [AAWO]
70017
69941
-
Pro
TGG
[ENA]
¡û
>W141803131
JPGK01000001
Nitrospirota
Leptospirillum ferriphilum [JPGK]
53972
54048
+
Pro
TGG
[ENA]
¡û
>W1911494710
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
1534708
1534784
+
Pro
TGG
[ENA]
¡û
>C151019614
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
91986
92062
+
Pro
TGG
[Ensembl]
¡û
>C151091644
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
95596
95672
+
Pro
TGG
[Ensembl]
¡û
>ENV09001999
ACXJ01005533
Mine drainage metagenome Contig1
341
417
+
Pro
TGG
[ENA]
¡û
>W1511705751
LGSH01000044
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
106901
106825
-
Pro
TGG
[ENA]
¡û
>W121055883
AIJM01000003
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
29707
29631
-
Pro
TGG
[ENA]
¡û
>C131001600
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
86846
86922
+
Pro
TGG
[Ensembl]
¡û
>WENV076970
AADL01000006
Acid Mine Drainage microbial communities from Richmond mine
60942
60866
-
Pro
TGG
[ENA]
>WENV080268
AAWO01000061
Acid Mine Drainage microbial communities from Richmond mine
70017
69941
-
Pro
TGG
[ENA]
Identical group No.304168 (6 seq.)
>W131215752
ATVG01000008
Actinomycetota
Corynebacterium massiliense DSM 45435 [ATVG]
1734
1808
+
Pro
TGG
[ENA]
¡û
>W141000014
AADL01000428
Unclassified
mine drainage metagenome Group III [AADL]
3332
3408
+
Pro
TGG
[ENA]
¡û
>W09132234
ACNP01000083
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
82125
82201
+
Pro
TGG
[ENA]
¡û
>W1910550328
FZQV01000002
Actinomycetota
Ruaniaceae bacterium KH17 [FZQV]
11522
11446
-
Pro
TGG
[ENA]
¡û
>ENV09002064
ACXJ01008676
Mine drainage metagenome Contig1
531
455
-
Pro
TGG
[ENA]
¡û
>WENV077022
AADL01000428
Acid Mine Drainage microbial communities from Richmond mine
3331
3409
+
Pro
TGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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