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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = TGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451315 (15 seq.)
>W1711628692
MPOJ01000002
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
123135
123060
-
Thr
TGT
[ENA]
¡û
>W1711628765
MPOK01000064
Nitrospirota
Leptospirillum ferriphilum [MPOK]
17192
17117
-
Thr
TGT
[ENA]
¡û
>W141000009
AADL01000367
Unclassified
mine drainage metagenome Group III [AADL]
4484
4559
+
Thr
TGT
[ENA]
¡û
>W141000168
AADL01002465
Unclassified
mine drainage metagenome Group III [AADL]
40261
40186
-
Thr
TGT
[ENA]
¡û
>W09106621
AAWO01000003
Unclassified
mine drainage metagenome rubarum [AAWO]
2926
2851
-
Thr
TGT
[ENA]
¡û
>W141803165
JPGK01000010
Nitrospirota
Leptospirillum ferriphilum [JPGK]
5414
5489
+
Thr
TGT
[ENA]
¡û
>W1911494719
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
2287563
2287638
+
Thr
TGT
[ENA]
¡û
>C151019622
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
877651
877726
+
Thr
TGT
[Ensembl]
¡û
>C151091676
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
1648551
1648476
-
Thr
TGT
[Ensembl]
¡û
>ENV09002026
ACXJ01007191
Mine drainage metagenome Contig1
337
262
-
Thr
TGT
[ENA]
¡û
>W1511705738
LGSH01000028
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
19192
19117
-
Thr
TGT
[ENA]
¡û
>W121055895
AIJM01000017
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
24743
24668
-
Thr
TGT
[ENA]
¡û
>C131001609
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
993743
993818
+
Thr
TGT
[Ensembl]
¡û
>WENV077017
AADL01000367
Acid Mine Drainage microbial communities from Richmond mine
4484
4559
+
Thr
TGT
[ENA]
>WENV080236
AAWO01000003
Acid Mine Drainage microbial communities from Richmond mine
2926
2851
-
Thr
TGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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