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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = TTC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240593 (15 seq.)
>W1711628704
MPOJ01000009
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
77589
77666
+
Glu
TTC
[ENA]
¡û
>W1711628762
MPOK01000057
Nitrospirota
Leptospirillum ferriphilum [MPOK]
3409
3332
-
Glu
TTC
[ENA]
¡û
>W141000164
AADL01002461
Unclassified
mine drainage metagenome Group III [AADL]
94556
94479
-
Glu
TTC
[ENA]
¡û
>W141000165
AADL01002462
Unclassified
mine drainage metagenome Group III [AADL]
135482
135559
+
Glu
TTC
[ENA]
¡û
>W09106622
AAWO01000004
Unclassified
mine drainage metagenome rubarum [AAWO]
36236
36313
+
Glu
TTC
[ENA]
¡û
>W141803148
JPGK01000003
Nitrospirota
Leptospirillum ferriphilum [JPGK]
194896
194819
-
Glu
TTC
[ENA]
¡û
>W1911494723
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
2052454
2052377
-
Glu
TTC
[ENA]
¡û
>C151091663
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
1882125
1882202
+
Glu
TTC
[Ensembl]
¡û
>W1511705740
LGSH01000034
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
34227
34304
+
Glu
TTC
[ENA]
¡û
>C121001313
AP012342
Nitrospirota
Leptospirillum ferrooxidans C2-3 [AP012342]
1848289
1848366
+
Glu
TTC
[Ensembl]
¡û
>W121055879
AIJM01000002
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
180061
180138
+
Glu
TTC
[ENA]
¡û
>C131001638
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
758037
757960
-
Glu
TTC
[Ensembl]
¡û
>WENV076969
AADL01000004
Acid Mine Drainage microbial communities from Richmond mine
442
519
+
Glu
TTC
[ENA]
>WENV076974
AADL01000013
Acid Mine Drainage microbial communities from Richmond mine
141
218
+
Glu
TTC
[ENA]
>WENV080239
AAWO01000004
Acid Mine Drainage microbial communities from Richmond mine
36236
36313
+
Glu
TTC
[ENA]
Identical group No.245170 (5 seq.)
>A171003638
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
700194
700119
-
Glu
TTC
-
¡û
>A171006630
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1567863
1567788
-
Glu
TTC
-
¡û
>W141000064
AADL01001356
Unclassified
mine drainage metagenome Group III [AADL]
2258
2181
-
Glu
TTC
[ENA]
¡û
>W1610000067
AABC05000010
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
4739
4662
-
Glu
TTC
[ENA]
¡û
>WENV077072
AADL01001356
Acid Mine Drainage microbial communities from Richmond mine
2259
2180
-
Glu
TTC
[ENA]
Identical group No.245171 (2 seq.)
>W141000074
AADL01001500
Unclassified
mine drainage metagenome Group III [AADL]
29822
29896
+
Glu
TTC
[ENA]
¡û
>WENV077082
AADL01001500
Acid Mine Drainage microbial communities from Richmond mine
29822
29899
+
Glu
TTC
[ENA]
Identical group No.245178 (3 seq.)
>W141000211
AADL01002526
Unclassified
mine drainage metagenome Group III [AADL]
3410
3333
-
Glu
TTC
[ENA]
¡û
>C151019651
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
635203
635126
-
Glu
TTC
[Ensembl]
¡û
>WENV076968
AADL01000003
Acid Mine Drainage microbial communities from Richmond mine
741
818
+
Glu
TTC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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