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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = TTG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.488105 (9 seq.)
>A171003625
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
944693
944767
+
Gln
TTG
-
¡û
>A171006629
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1804738
1804812
+
Gln
TTG
-
¡û
>W141000061
AADL01001298
Unclassified
mine drainage metagenome Group III [AADL]
7213
7287
+
Gln
TTG
[ENA]
¡û
>W141000097
AADL01001573
Unclassified
mine drainage metagenome Group III [AADL]
2273
2201
-
Gln
TTG
[ENA]
¡û
>W141000131
AADL01001867
Unclassified
mine drainage metagenome Group III [AADL]
1945
2017
+
Gln
TTG
[ENA]
¡û
>W1610000069
AABC05000011
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
71759
71833
+
Gln
TTG
[ENA]
¡û
>WENV077069
AADL01001298
Acid Mine Drainage microbial communities from Richmond mine
7213
7290
+
Gln
TTG
[ENA]
>WENV077104
AADL01001573
Acid Mine Drainage microbial communities from Richmond mine
2273
2198
-
Gln
TTG
[ENA]
>WENV077139
AADL01001867
Acid Mine Drainage microbial communities from Richmond mine
1945
2020
+
Gln
TTG
[ENA]
Identical group No.488109 (5 seq.)
>A171007760
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
281103
281028
-
Gln
TTG
-
¡û
>A171007797
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
263820
263745
-
Gln
TTG
-
¡û
>W141000109
AADL01001643
Unclassified
mine drainage metagenome Group III [AADL]
1377
1452
+
Gln
TTG
[ENA]
¡û
>ENV09002137
ACXJ01010336
Mine drainage metagenome Contig1
5204
5129
-
Gln
TTG
[ENA]
¡û
>WENV077117
AADL01001643
Acid Mine Drainage microbial communities from Richmond mine
1377
1454
+
Gln
TTG
[ENA]
Identical group No.653331 (14 seq.)
>W1711628713
MPOJ01000011
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
69237
69311
+
Gln
TTG
[ENA]
¡û
>W1711628735
MPOK01000002
Nitrospirota
Leptospirillum ferriphilum [MPOK]
34675
34749
+
Gln
TTG
[ENA]
¡û
>W141000177
AADL01002502
Unclassified
mine drainage metagenome Group III [AADL]
27400
27326
-
Gln
TTG
[ENA]
¡û
>WENV183679567
ORMF010080533
[ORMF] groundwater metagenome; groundwater
1542
1468
-
Gln
TTG
[ENA]
¢þ
>W09106659
AAWO01000082
Unclassified
mine drainage metagenome rubarum [AAWO]
113245
113171
-
Gln
TTG
[ENA]
¡û
>W141803167
JPGK01000011
Nitrospirota
Leptospirillum ferriphilum [JPGK]
12722
12648
-
Gln
TTG
[ENA]
¡û
>W1911494736
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
618948
618874
-
Gln
TTG
[ENA]
¡û
>C151019639
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
1496658
1496584
-
Gln
TTG
[Ensembl]
¡û
>C151091651
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
976292
976366
+
Gln
TTG
[Ensembl]
¡û
>W1511705724
LGSH01000006
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
48558
48632
+
Gln
TTG
[ENA]
¡û
>W121055897
AIJM01000034
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
20482
20556
+
Gln
TTG
[ENA]
¡û
>C131001626
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1545285
1545211
-
Gln
TTG
[Ensembl]
¡û
>WENV076988
AADL01000046
Acid Mine Drainage microbial communities from Richmond mine
5018
4942
-
Gln
TTG
[ENA]
>WENV080281
AAWO01000082
Acid Mine Drainage microbial communities from Richmond mine
113246
113170
-
Gln
TTG
[ENA]
Identical group No.674643 (4 seq.)
>W141000021
AADL01000531
Unclassified
mine drainage metagenome Group III [AADL]
3555
3629
+
Gln
TTG
[ENA]
¡û
>W09132230
ACNP01000079
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
115170
115244
+
Gln
TTG
[ENA]
¡û
>ENV09002052
ACXJ01008107
Mine drainage metagenome Contig1
1078
1152
+
Gln
TTG
[ENA]
¡û
>WENV077029
AADL01000531
Acid Mine Drainage microbial communities from Richmond mine
3555
3629
+
Gln
TTG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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