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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = TTT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.304171 (11 seq.)
>A171003635
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1141576
1141501
-
Lys
TTT
-
¡û
>W141000046
AADL01001090
Unclassified
mine drainage metagenome Group III [AADL]
6535
6610
+
Lys
TTT
[ENA]
¡û
>W141000077
AADL01001501
Unclassified
mine drainage metagenome Group III [AADL]
34866
34791
-
Lys
TTT
[ENA]
¡û
>W1910585081
JYHS01000002
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
404124
404049
-
Lys
TTT
[ENA]
¡û
>W1610000072
AABC05000011
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
268642
268567
-
Lys
TTT
[ENA]
¡û
>W1610047582
BBDK01000002
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
26980
26905
-
Lys
TTT
[ENA]
¡û
>W1610642291
LJCQ01000063
Unclassified
Acidiplasma aeolicum V [LJCQ]
5219
5294
+
Lys
TTT
[ENA]
¡û
>W1610670450
LKBG01000001
Unclassified
Acidiplasma aeolicum VT [LKBG]
42958
43033
+
Lys
TTT
[ENA]
¡û
>W1610670484
LKBH01000012
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
8574
8499
-
Lys
TTT
[ENA]
¡û
>WENV077054
AADL01001090
Acid Mine Drainage microbial communities from Richmond mine
6535
6613
+
Lys
TTT
[ENA]
>WENV077085
AADL01001501
Acid Mine Drainage microbial communities from Richmond mine
34866
34788
-
Lys
TTT
[ENA]
Identical group No.304177 (5 seq.)
>A171007749
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1469440
1469367
-
Lys
TTT
-
¡û
>A171007786
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1463617
1463544
-
Lys
TTT
-
¡û
>W141000099
AADL01001607
Unclassified
mine drainage metagenome Group III [AADL]
11000
10927
-
Lys
TTT
[ENA]
¡û
>ENV09002060
ACXJ01008440
Mine drainage metagenome Contig1
1374
1447
+
Lys
TTT
[ENA]
¡û
>WENV077108
AADL01001607
Acid Mine Drainage microbial communities from Richmond mine
11000
10924
-
Lys
TTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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