This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ackermannviridae
Anticodon = CAT
HIT:
18 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257791 (1 seq.)
>PHG181004431
KY914485
Ackermannviridae
Aeromonas phage phiA8-29 (KY914485)
79977
79900
-
Met
CAT
[ENA]
¡û
Identical group No.297350 (2 seq.)
>PHG181006907
MG592609
Ackermannviridae
Vibrio phage 1.244.A._10N.261.54.C3 (MG592609)
143810
143734
-
Met
CAT
[ENA]
¡û
>PHG181006911
MG592621
Ackermannviridae
Vibrio phage 1.255.O._10N.286.45.F1 (MG592621)
143810
143734
-
Met
CAT
[ENA]
¡û
Identical group No.300063 (4 seq.)
>PHG14102042
KC139523
Myoviridae
Salmonella phage FSL SP-063 TN106 (KC139523)
3574
3650
+
Met
CAT
[ENA]
¡û
>PHG14102076
KC139564
Myoviridae
Salmonella phage FSL SP-029 TN106 (KC139564)
3564
3640
+
Met
CAT
[ENA]
¡û
>PHG14102624
KF669653
Ackermannviridae
Salmonella phage Marshall PM6 (KF669653)
22243
22167
-
Met
CAT
[ENA]
¡û
>PHG14102628
KF669654
Ackermannviridae
Salmonella phage Maynard PM6 (KF669654)
20610
20534
-
Met
CAT
[ENA]
¡û
Identical group No.348970 (1 seq.)
>PHG14101878
JX181829
Ackermannviridae
Salmonella phage SKML-39 (JX181829)
147696
147620
-
Met
CAT
[ENA]
¡û
Identical group No.406208 (2 seq.)
>WENV170560360
CYGL01000829
[CYGL] human gut metagenome;
5913
5837
-
Met
CAT
[ENA]
¢þ
>PHG181001005
KP797973
Ackermannviridae
Salmonella phage Det7 (KP797973)
133150
133074
-
Met
CAT
[ENA]
¡û
Identical group No.407104 (2 seq.)
>PHG181008078
MH370368
Ackermannviridae
Salmonella phage S115 (MH370368)
138107
138183
+
Met
CAT
[ENA]
¡û
>PHG14101224
JN673056
Ackermannviridae
Escherichia phage PhaxI G (JN673056)
136135
136211
+
Met
CAT
[ENA]
¡û
Identical group No.407106 (2 seq.)
>PHG181003323
KX438380
Ackermannviridae
Salmonella phage vB-SalM-PM10 (KX438380)
101837
101913
+
Met
CAT
[ENA]
¡û
>PHG14102780
KJ174317
Ackermannviridae
Salmonella phage vB_SalM_SJ2 VD13 (KJ174317)
97759
97683
-
Met
CAT
[ENA]
¡û
Identical group No.504459 (11 seq.)
>PHG181002609
KX245012
Ackermannviridae
Salmonella phage GG32 (KX245012)
19041
19116
+
Met
CAT
[ENA]
¡û
>PHG181004245
KY630163
Ackermannviridae
Salmonella phage S8 (KY630163)
99168
99093
-
Met
CAT
[ENA]
¡û
>PHG181004385
KY787213
Ackermannviridae
Salmonella phage BSP101 (KY787213)
45265
45190
-
Met
CAT
[ENA]
¡û
>PHG181006755
MG383452
Ackermannviridae
Escherichia phage FEC14 (MG383452)
155357
155282
-
Met
CAT
[ENA]
¡û
>PHG181007197
MG748547
Ackermannviridae
Escherichia phage EP75 (MG748547)
116733
116658
-
Met
CAT
[ENA]
¡û
>PHG181008105
MH370370
Ackermannviridae
Salmonella phage S117 (MH370370)
137557
137632
+
Met
CAT
[ENA]
¡û
>PHG14100144
FQ312032
Ackermannviridae
Salmonella virus ViI phi 2 (FQ312032)
137231
137306
+
Met
CAT
[ENA]
¡û
>PHG14100582
HQ259103
Ackermannviridae
Salmonella phage SFP10 ENT47670 (HQ259103)
137450
137525
+
Met
CAT
[ENA]
¡û
>PHG14101795
JX128257
Ackermannviridae
Escherichia phage ECML-4 Lu11 (JX128257)
76863
76788
-
Met
CAT
[ENA]
¡û
>PHG14101873
JX181828
Ackermannviridae
Salmonella phage STML-13-1 STML-198 (JX181828)
112398
112473
+
Met
CAT
[ENA]
¡û
>PHG14102783
KJ174318
Ackermannviridae
Salmonella phage vB_SalM_SJ3 VD13 (KJ174318)
83282
83207
-
Met
CAT
[ENA]
¡û
Identical group No.523519 (1 seq.)
>PHG181004479
LC121084
Ackermannviridae
Ralstonia phage RSP15 (LC121084)
90809
90734
-
Met
CAT
[ENA]
¡û
Identical group No.561460 (2 seq.)
>PHG181002595
KX171211
Ackermannviridae
Salmonella phage vB_SenM-2 (KX171211)
133637
133562
-
Met
CAT
[ENA]
¡û
>PHG181008109
MH370371
Ackermannviridae
Salmonella phage S118 (MH370371)
137247
137322
+
Met
CAT
[ENA]
¡û
Identical group No.572064 (3 seq.)
>PHG181002583
KX147096
Ackermannviridae
Serratia phage vB-Sru-IME250 (KX147096)
67143
67068
-
Met
CAT
[ENA]
¡û
>PHG181003772
KY073123
Ackermannviridae
Serratia phage vB-Sru-IME250 (KY073123)
67143
67068
-
Met
CAT
[ENA]
¡û
>PHG14100009
AB797215
Ackermannviridae
Klebsiella phage 0507-KN2-1 (AB797215)
85092
85017
-
Met
CAT
[ENA]
¡û
Identical group No.592239 (1 seq.)
>PHG181005153
MF285619
Ackermannviridae
Serratia phage 2050H1 (MF285619)
20627
20552
-
Met
CAT
[ENA]
¡û
Identical group No.593499 (2 seq.)
>PHG181004838
MF001362
Ackermannviridae
Salmonella phage SP1 (MF001362)
131200
131275
+
Met
CAT
[ENA]
¡û
>PHG14101041
JN126049
Ackermannviridae
Salmonella phage Sh19 Shauna1 (JN126049)
137303
137378
+
Met
CAT
[ENA]
¡û
Identical group No.619435 (1 seq.)
>PHG181007277
MG770379
Ackermannviridae
Klebsiella virus vB_KpnM_KpS110 (MG770379)
74851
74776
-
Met
CAT
[ENA]
¡û
Identical group No.620387 (2 seq.)
>PHG181003349
KX452697
Ackermannviridae
Serratia phage KNP4 KPN4 (KX452697)
2537
2462
-
Met
CAT
[ENA]
¡û
>PHG14101983
JX878496
Ackermannviridae
Serratia phage phiMAM1 Pseudomonas putida GB-1 (JX878496)
19404
19329
-
Met
CAT
[ENA]
¡û
Identical group No.627255 (1 seq.)
>PHG181006775
MG428991
Ackermannviridae
Klebsiella phage May (MG428991)
20915
20840
-
Met
CAT
[ENA]
¡û
Identical group No.639001 (1 seq.)
>PHG181006770
MG428990
Ackermannviridae
Klebsiella phage Menlow (MG428990)
21102
21027
-
Met
CAT
[ENA]
¡û
Identical group No.703740 (4 seq.)
>PHG181003727
KY000003
Ackermannviridae
Salmonella phage STP07 (KY000003)
3339
3413
+
Met
CAT
[ENA]
¡û
>PHG181006781
MG428992
Ackermannviridae
Salmonella phage Mutine (MG428992)
22886
22812
-
Met
CAT
[ENA]
¡û
>PHG14101174
JN593240
Ackermannviridae
Escherichia virus CBA120 vB_EcoM_CBA120 (JN593240)
136807
136881
+
Met
CAT
[ENA]
¡û
>PHG14103147
KM389299
unclassified bacterial viruses
Escherichia phage CBA6 (KM389299)
3220
3294
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK