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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ackermannviridae
Anticodon = GCT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.35848 (1 seq.)
>PHG181004474
LC121084
Ackermannviridae
Ralstonia phage RSP15 (LC121084)
94198
94108
-
Ser
GCT
[ENA]
¡û
Identical group No.41180 (1 seq.)
>PHG181002598
KX171211
Ackermannviridae
Salmonella phage vB_SenM-2 (KX171211)
132396
132306
-
Ser
GCT
[ENA]
¡û
Identical group No.74710 (26 seq.)
>WENV170560363
CYGL01000829
[CYGL] human gut metagenome;
4770
4682
-
Ser
GCT
[ENA]
¢þ
>PHG181001008
KP797973
Ackermannviridae
Salmonella phage Det7 (KP797973)
132213
132125
-
Ser
GCT
[ENA]
¡û
>PHG181001290
KR296692
Ackermannviridae
Salmonella phage 38 (KR296692)
18040
17952
-
Ser
GCT
[ENA]
¡û
>PHG181003326
KX438380
Ackermannviridae
Salmonella phage vB-SalM-PM10 (KX438380)
103443
103531
+
Ser
GCT
[ENA]
¡û
>PHG181004248
KY630163
Ackermannviridae
Salmonella phage S8 (KY630163)
97687
97599
-
Ser
GCT
[ENA]
¡û
>PHG181004387
KY787213
Ackermannviridae
Salmonella phage BSP101 (KY787213)
43875
43787
-
Ser
GCT
[ENA]
¡û
>PHG181006757
MG383452
Ackermannviridae
Escherichia phage FEC14 (MG383452)
154126
154038
-
Ser
GCT
[ENA]
¡û
>PHG181006783
MG428992
Ackermannviridae
Salmonella phage Mutine (MG428992)
21638
21550
-
Ser
GCT
[ENA]
¡û
>PHG181008081
MH370368
Ackermannviridae
Salmonella phage S115 (MH370368)
139658
139746
+
Ser
GCT
[ENA]
¡û
>PHG181008108
MH370370
Ackermannviridae
Salmonella phage S117 (MH370370)
138858
138946
+
Ser
GCT
[ENA]
¡û
>PHG181008112
MH370371
Ackermannviridae
Salmonella phage S118 (MH370371)
138452
138540
+
Ser
GCT
[ENA]
¡û
>PHG14100093
FJ373894
Ackermannviridae
Shigella phage Ag3 wBol1b (FJ373894)
138924
139012
+
Ser
GCT
[ENA]
¡û
>PHG14100148
FQ312032
Ackermannviridae
Salmonella virus ViI phi 2 (FQ312032)
138472
138560
+
Ser
GCT
[ENA]
¡û
>PHG14100584
HQ259103
Ackermannviridae
Salmonella phage SFP10 ENT47670 (HQ259103)
138683
138771
+
Ser
GCT
[ENA]
¡û
>PHG14101044
JN126049
Ackermannviridae
Salmonella phage Sh19 Shauna1 (JN126049)
138657
138745
+
Ser
GCT
[ENA]
¡û
>PHG14101176
JN593240
Ackermannviridae
Escherichia virus CBA120 vB_EcoM_CBA120 (JN593240)
138074
138162
+
Ser
GCT
[ENA]
¡û
>PHG14101226
JN673056
Ackermannviridae
Escherichia phage PhaxI G (JN673056)
137453
137541
+
Ser
GCT
[ENA]
¡û
>PHG14101798
JX128257
Ackermannviridae
Escherichia phage ECML-4 Lu11 (JX128257)
75767
75679
-
Ser
GCT
[ENA]
¡û
>PHG14101876
JX181828
Ackermannviridae
Salmonella phage STML-13-1 STML-198 (JX181828)
113494
113582
+
Ser
GCT
[ENA]
¡û
>PHG14101881
JX181829
Ackermannviridae
Salmonella phage SKML-39 (JX181829)
145284
145196
-
Ser
GCT
[ENA]
¡û
>PHG14102045
KC139523
Myoviridae
Salmonella phage FSL SP-063 TN106 (KC139523)
4327
4415
+
Ser
GCT
[ENA]
¡û
>PHG14102079
KC139564
Myoviridae
Salmonella phage FSL SP-029 TN106 (KC139564)
4317
4405
+
Ser
GCT
[ENA]
¡û
>PHG14102627
KF669653
Ackermannviridae
Salmonella phage Marshall PM6 (KF669653)
21490
21402
-
Ser
GCT
[ENA]
¡û
>PHG14102631
KF669654
Ackermannviridae
Salmonella phage Maynard PM6 (KF669654)
19857
19769
-
Ser
GCT
[ENA]
¡û
>PHG14102782
KJ174317
Ackermannviridae
Salmonella phage vB_SalM_SJ2 VD13 (KJ174317)
96178
96090
-
Ser
GCT
[ENA]
¡û
>PHG14102786
KJ174318
Ackermannviridae
Salmonella phage vB_SalM_SJ3 VD13 (KJ174318)
81805
81717
-
Ser
GCT
[ENA]
¡û
Identical group No.79313 (1 seq.)
>PHG181004521
LC373201
Ackermannviridae
Enterobacter phage EspM4VN (LC373201)
56996
56908
-
Ser
GCT
[ENA]
¡û
Identical group No.175241 (3 seq.)
>PHG181006772
MG428990
Ackermannviridae
Klebsiella phage Menlow (MG428990)
20579
20494
-
Ser
GCT
[ENA]
¡û
>PHG181006776
MG428991
Ackermannviridae
Klebsiella phage May (MG428991)
20227
20142
-
Ser
GCT
[ENA]
¡û
>PHG181007278
MG770379
Ackermannviridae
Klebsiella virus vB_KpnM_KpS110 (MG770379)
74465
74380
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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