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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = CAA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90837 (1 seq.)
>PL171001415
CP020041
Actinobacteria
Streptomyces sp. 3211 plasmid:p3211-2
167452
167539
+
Leu
CAA
[ENA]
¡û
Identical group No.108029 (1 seq.)
>PL172000019
CP018784
Actinobacteria
Curtobacterium pusillum AA3 plasmid:pCPAA3
256562
256647
+
Leu
CAA
[ENA]
¡û
Identical group No.172859 (1 seq.)
>PL191000848
CP031166
Actinobacteria
Euzebya sp. DY32-46 plasmid:pEDY32-46I (CP031166)
347456
347541
+
Leu
CAA
[ENA]
¡û
Identical group No.262445 (3 seq.)
>PL171000319
CP001342
Actinobacteria
Pseudarthrobacter chlorophenolicus A6 plasmid:pACHL01
31493
31568
+
Leu
CAA
[ENA]
¡û
>W08008045
ABKU01000001
Actinomycetota
Pseudarthrobacter chlorophenolicus A6 [ABKU]
410297
410372
+
Leu
CAA
[ENA]
¡û
>W1710527636
FNLE01000002
Actinomycetota
Pseudarthrobacter chlorophenolicus [FNLE]
332012
332087
+
Leu
CAA
[ENA]
¡û
Identical group No.279557 (45 seq.)
>W1711080640
LSRE01000044
Actinomycetota
Tsukamurella pseudospumae [LSRE]
211219
211295
+
Leu
CAA
[ENA]
¡û
>W1711080661
LSRF01000001
Actinomycetota
Tsukamurella pseudospumae [LSRF]
86275
86199
-
Leu
CAA
[ENA]
¡û
>W1711080798
LSRH01000040
Actinomycetota
Tsukamurella pulmonis [LSRH]
113433
113357
-
Leu
CAA
[ENA]
¡û
>W1711080826
LSRI01000021
Actinomycetota
Tsukamurella pulmonis [LSRI]
23665
23589
-
Leu
CAA
[ENA]
¡û
>W1711080855
LSRJ01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
25647
25571
-
Leu
CAA
[ENA]
¡û
>W1711101988
LTNI01000014
Actinomycetota
Corynebacterium sp. HMSC22B11 [LTNI]
73123
73049
-
Leu
CAA
[ENA]
¡û
>W1711187663
LWPQ01000064
Actinomycetota
Corynebacterium sp. HMSC27B11 [LWPQ]
96668
96594
-
Leu
CAA
[ENA]
¡û
>W1711492299
MKKG01000094
Actinomycetota
Gordonia sp. CNJ-863 [MKKG]
74660
74584
-
Leu
CAA
[ENA]
¡û
>W1711502618
MKSW01000003
Actinomycetota
Actinobacteria bacterium 69-20 [MKSW]
85853
85779
-
Leu
CAA
[ENA]
¡û
>W131162058
AQYG01000048
Actinomycetota
Jongsikchunia kroppenstedtii DSM 45133 [AQYG]
259878
259802
-
Leu
CAA
[ENA]
¡û
>W131165362
ARBM01000005
Actinomycetota
Corynebacterium caspium DSM 44850 [ARBM]
37514
37588
+
Leu
CAA
[ENA]
¡û
>W131219696
ATYT01000016
Actinomycetota
Thermocrispum municipale DSM 44069 [ATYT]
76270
76344
+
Leu
CAA
[ENA]
¡û
>W131219771
ATYV01000006
Actinomycetota
Corynebacterium sputi DSM 45148 [ATYV]
146477
146551
+
Leu
CAA
[ENA]
¡û
>W131219879
ATYX01000006
Actinomycetota
Thermocrispum agreste DSM 44070 [ATYX]
383633
383557
-
Leu
CAA
[ENA]
¡û
>W131228204
AUFT01000005
Actinomycetota
Nakamurella lactea DSM 19367 [AUFT]
156811
156735
-
Leu
CAA
[ENA]
¡û
>W131239499
BANS01000029
Actinomycetota
Gordonia amicalis NBRC 100051 [BANS]
9839
9763
-
Leu
CAA
[ENA]
¡û
>W131240895
BAOQ01000011
Actinomycetota
Gordonia paraffinivorans NBRC 108238 [BAOQ]
116505
116429
-
Leu
CAA
[ENA]
¡û
>WENV181401566
OFTX01000991
[OFTX] sludge metagenome; sludge
11545
11470
-
Leu
CAA
[ENA]
¢þ
>WENV181401849
OFTX01010405
[OFTX] sludge metagenome; sludge
877
951
+
Leu
CAA
[ENA]
¢þ
>W141144176
AWTB01000032
Actinomycetota
Gordonia amicalis CCMA-559 [AWTB]
49247
49321
+
Leu
CAA
[ENA]
¡û
>W141200054
AYXO01000024
Actinomycetota
Gordonia alkanivorans CGMCC 6845 [AYXO]
5468
5392
-
Leu
CAA
[ENA]
¡û
>W141243930
CAJY01000040
Actinomycetota
Tsukamurella sp. 1534 [CAJY]
103364
103440
+
Leu
CAA
[ENA]
¡û
>W141256039
CBVP010000105
Actinomycetota
Gordonia alkanivorans s104 [CBVP]
17362
17438
+
Leu
CAA
[ENA]
¡û
>C08003920
AM942444
Actinomycetota
Corynebacterium urealyticum DSM 7109 [AM942444]
1357213
1357287
+
Leu
CAA
[Ensembl]
¡û
>PL191001618
LR134447
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:5 (LR134447)
160988
160912
-
Leu
CAA
[ENA]
¡û
>C181035843
CP019066
Actinomycetota
Tsukamurella tyrosinosolvens MH1 [CP019066]
2813402
2813327
-
Leu
CAA
-
¡û
>C181226721
LT906481
Actinomycetota
Corynebacterium urealyticum NCTC12011 [LT906481]
668128
668202
+
Leu
CAA
-
¡û
>C191050799
CP027114
Actinomycetota
Gordonia alkanivorans YC-RL2 [CP027114]
3882464
3882540
+
Leu
CAA
-
¡û
>C191193467
LR131273
Actinomycetota
Tsukamurella paurometabola NCTC10741 [LR131273]
3507950
3508024
+
Leu
CAA
-
¡û
>W09110310
ABVA01000005
Actinomycetota
Tsukamurella paurometabola DSM 20162 [ABVA]
93126
93050
-
Leu
CAA
[ENA]
¡û
>W1910611744
LFLR01000019
Actinomycetota
Gordonia paraffinivorans MTZ 041 [LFLR]
32884
32960
+
Leu
CAA
[ENA]
¡û
>W1911717722
QQQF01000153
Actinomycetota
Tsukamurella pulmonis PW1004 [QQQF]
10377
10451
+
Leu
CAA
[ENA]
¡û
>W1810760485
QPKD01000148
Actinomycetota
Tsukamurella tyrosinosolvens PW899 [QPKD]
7430
7506
+
Leu
CAA
[ENA]
¡û
>C10113699
CP001966
Actinomycetota
Tsukamurella paurometabola DSM 20162 [CP001966]
2575450
2575374
-
Leu
CAA
[Ensembl]
¡û
>W11184688
BACI01000094
Actinomycetota
Gordonia alkanivorans NBRC 16433 [BACI]
12894
12970
+
Leu
CAA
[ENA]
¡û
>W121126698
BAHE01000028
Actinomycetota
Gordonia namibiensis NBRC 108229 [BAHE]
23161
23085
-
Leu
CAA
[ENA]
¡û
>C131012689
CP004085
Actinomycetota
Corynebacterium urealyticum DSM 7111 [CP004085]
1340579
1340653
+
Leu
CAA
[Ensembl]
¡û
>W1610919507
LSRE01000044
Actinomycetota
Tsukamurella pseudospumae [LSRE]
211219
211295
+
Leu
CAA
[ENA]
¡û
>W1610919528
LSRF01000001
Actinomycetota
Tsukamurella pseudospumae [LSRF]
86275
86199
-
Leu
CAA
[ENA]
¡û
>W1610919665
LSRH01000040
Actinomycetota
Tsukamurella pulmonis [LSRH]
113433
113357
-
Leu
CAA
[ENA]
¡û
>W1610919693
LSRI01000021
Actinomycetota
Tsukamurella pulmonis [LSRI]
23665
23589
-
Leu
CAA
[ENA]
¡û
>W1610919722
LSRJ01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
25647
25571
-
Leu
CAA
[ENA]
¡û
>W1710527727
FNLF01000002
Actinomycetota
Tsukamurella pulmonis [FNLF]
2833771
2833695
-
Leu
CAA
[ENA]
¡û
>W1710527891
FNLM01000034
Actinomycetota
Gordonia westfalica [FNLM]
1655388
1655464
+
Leu
CAA
[ENA]
¡û
>W1710534708
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
3169690
3169614
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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