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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = CAC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.526583 (4 seq.)
>W1711080873
LSRJ01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
4400
4473
+
Val
CAC
[ENA]
¡û
>PL191001625
LR134450
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:8 (LR134450)
285270
285197
-
Val
CAC
[ENA]
¡û
>W1610919740
LSRJ01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
4400
4473
+
Val
CAC
[ENA]
¡û
>W1710534672
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
2704590
2704663
+
Val
CAC
[ENA]
¡û
Identical group No.603448 (3 seq.)
>PL171000320
CP001342
Actinobacteria
Pseudarthrobacter chlorophenolicus A6 plasmid:pACHL01
31721
31794
+
Val
CAC
[ENA]
¡û
>W08008046
ABKU01000001
Actinomycetota
Pseudarthrobacter chlorophenolicus A6 [ABKU]
410525
410598
+
Val
CAC
[ENA]
¡û
>W1710527637
FNLE01000002
Actinomycetota
Pseudarthrobacter chlorophenolicus [FNLE]
332240
332313
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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