This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = CCT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.252807 (2 seq.)
>PL171001882
LT703506
Actinobacteria
Mycobacterium chimaera Mycobacterium chimaera MC045 plasmid:2
238565
238488
-
Arg
CCT
[ENA]
¡û
>W1710084931
BDMY01000032
Actinomycetota
Mycobacterium avium subsp. hominissuis [BDMY]
48747
48670
-
Arg
CCT
[ENA]
¡û
Identical group No.337925 (17 seq.)
>W1711069507
LSFR01000002
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
673528
673454
-
Arg
CCT
[ENA]
¡û
>W1711080739
LSRG01000014
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
636807
636733
-
Arg
CCT
[ENA]
¡û
>W1711080758
LSRH01000003
Actinomycetota
Tsukamurella pulmonis [LSRH]
716313
716239
-
Arg
CCT
[ENA]
¡û
>W1711080813
LSRI01000001
Actinomycetota
Tsukamurella pulmonis [LSRI]
274431
274357
-
Arg
CCT
[ENA]
¡û
>W1711080902
LSRJ01000011
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
844265
844191
-
Arg
CCT
[ENA]
¡û
>PL191001668
LR134465
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:23 (LR134465)
209338
209412
+
Arg
CCT
[ENA]
¡û
>C181035857
CP019066
Actinomycetota
Tsukamurella tyrosinosolvens MH1 [CP019066]
942371
942297
-
Arg
CCT
-
¡û
>C191193449
LR131273
Actinomycetota
Tsukamurella paurometabola NCTC10741 [LR131273]
678805
678879
+
Arg
CCT
-
¡û
>W1911717729
QQQF01000173
Actinomycetota
Tsukamurella pulmonis PW1004 [QQQF]
2685
2759
+
Arg
CCT
[ENA]
¡û
>W1810760471
QPKD01000057
Actinomycetota
Tsukamurella tyrosinosolvens PW899 [QPKD]
1389
1463
+
Arg
CCT
[ENA]
¡û
>W1610910035
LSFR01000002
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
673528
673454
-
Arg
CCT
[ENA]
¡û
>W1610919606
LSRG01000014
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
636807
636733
-
Arg
CCT
[ENA]
¡û
>W1610919625
LSRH01000003
Actinomycetota
Tsukamurella pulmonis [LSRH]
716313
716239
-
Arg
CCT
[ENA]
¡û
>W1610919680
LSRI01000001
Actinomycetota
Tsukamurella pulmonis [LSRI]
274431
274357
-
Arg
CCT
[ENA]
¡û
>W1610919769
LSRJ01000011
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
844265
844191
-
Arg
CCT
[ENA]
¡û
>W1710527713
FNLF01000002
Actinomycetota
Tsukamurella pulmonis [FNLF]
3978493
3978567
+
Arg
CCT
[ENA]
¡û
>W1710534722
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
856876
856802
-
Arg
CCT
[ENA]
¡û
Identical group No.407685 (3 seq.)
>PL171000331
CP001342
Actinobacteria
Pseudarthrobacter chlorophenolicus A6 plasmid:pACHL01
426501
426577
+
Arg
CCT
[ENA]
¡û
>W08008026
ABKU01000001
Actinomycetota
Pseudarthrobacter chlorophenolicus A6 [ABKU]
378425
378501
+
Arg
CCT
[ENA]
¡û
>W1710527617
FNLE01000002
Actinomycetota
Pseudarthrobacter chlorophenolicus [FNLE]
300162
300238
+
Arg
CCT
[ENA]
¡û
Identical group No.526587 (4 seq.)
>W1711080879
LSRJ01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
5478
5551
+
Arg
CCT
[ENA]
¡û
>PL191001631
LR134450
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:8 (LR134450)
284192
284119
-
Arg
CCT
[ENA]
¡û
>W1610919746
LSRJ01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
5478
5551
+
Arg
CCT
[ENA]
¡û
>W1710534678
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
2705668
2705741
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK