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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = GAC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.601807 (1 seq.)
>PL193000096
CP031166
Actinobacteria
Euzebya sp. DY32-46 plasmid:pEDY32-46I (CP031166)
353228
353301
+
Val
GAC
[ENA]
¡û
Identical group No.697805 (4 seq.)
>W1711080881
LSRJ01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
6614
6686
+
Val
GAC
[ENA]
¡û
>PL191001633
LR134450
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:8 (LR134450)
283056
282984
-
Val
GAC
[ENA]
¡û
>W1610919748
LSRJ01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
6614
6686
+
Val
GAC
[ENA]
¡û
>W1710534680
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
2706804
2706876
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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