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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = GCA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.173068 (3 seq.)
>PL171000329
CP001342
Actinobacteria
Pseudarthrobacter chlorophenolicus A6 plasmid:pACHL01
34592
34677
+
Cys
GCA
[ENA]
¡û
>W08008055
ABKU01000001
Actinomycetota
Pseudarthrobacter chlorophenolicus A6 [ABKU]
413396
413481
+
Cys
GCA
[ENA]
¡û
>W1710527646
FNLE01000002
Actinomycetota
Pseudarthrobacter chlorophenolicus [FNLE]
335111
335196
+
Cys
GCA
[ENA]
¡û
Identical group No.422977 (1 seq.)
>PL171001368
CP018784
Actinobacteria
Curtobacterium pusillum AA3 plasmid:pCPAA3
264151
264225
+
Cys
GCA
[ENA]
¡û
Identical group No.744244 (1 seq.)
>PL191000844
CP031166
Actinobacteria
Euzebya sp. DY32-46 plasmid:pEDY32-46I (CP031166)
345478
345552
+
Cys
GCA
[ENA]
¡û
Identical group No.793739 (3 seq.)
>PL171000890
CP012886
Actinobacteria
Mycobacterium chimaera AH16 plasmid:unnamed1
229515
229586
+
Cys
GCA
[ENA]
¡û
>W1911241285
NSEU01000086
Actinomycetota
Mycobacterium avium FLAC0376 [NSEU]
81915
81844
-
Cys
GCA
[ENA]
¡û
>W1911278834
NTFX01000081
Actinomycetota
Mycobacterium intracellulare WCHMC000001 [NTFX]
466
395
-
Cys
GCA
[ENA]
¡û
Identical group No.799466 (4 seq.)
>W1711080886
LSRJ01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
10245
10318
+
Cys
GCA
[ENA]
¡û
>PL191001638
LR134450
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:8 (LR134450)
279425
279354
-
Cys
GCA
[ENA]
¡û
>W1610919753
LSRJ01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
10245
10318
+
Cys
GCA
[ENA]
¡û
>W1710534685
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
2710435
2710508
+
Cys
GCA
[ENA]
¡û
Identical group No.802722 (2 seq.)
>PL171001868
LT703506
Actinobacteria
Mycobacterium chimaera Mycobacterium chimaera MC045 plasmid:2
240874
240801
-
Cys
GCA
[ENA]
¡û
>W1710084917
BDMY01000032
Actinomycetota
Mycobacterium avium subsp. hominissuis [BDMY]
52414
52341
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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