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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = GTG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.252774 (2 seq.)
>PL173000212
LT703506
Actinobacteria
Mycobacterium chimaera Mycobacterium chimaera MC045 plasmid:2
238915
238838
-
His
GTG
[ENA]
¡û
>W1730002941
BDMY01000032
Actinomycetota
Mycobacterium avium subsp. hominissuis [BDMY]
49097
49020
-
His
GTG
[ENA]
¡û
Identical group No.262127 (1 seq.)
>PL193000094
CP031166
Actinobacteria
Euzebya sp. DY32-46 plasmid:pEDY32-46I (CP031166)
347945
348022
+
His
GTG
[ENA]
¡û
Identical group No.525930 (24 seq.)
>W1711069527
LSFR01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
105067
104992
-
His
GTG
[ENA]
¡û
>W1711080608
LSRE01000003
Actinomycetota
Tsukamurella pseudospumae [LSRE]
77800
77875
+
His
GTG
[ENA]
¡û
>W1711080676
LSRF01000044
Actinomycetota
Tsukamurella pseudospumae [LSRF]
128181
128256
+
His
GTG
[ENA]
¡û
>W1711080722
LSRG01000012
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
105415
105340
-
His
GTG
[ENA]
¡û
>W1711080772
LSRH01000012
Actinomycetota
Tsukamurella pulmonis [LSRH]
882195
882270
+
His
GTG
[ENA]
¡û
>W1711080837
LSRI01000024
Actinomycetota
Tsukamurella pulmonis [LSRI]
45660
45585
-
His
GTG
[ENA]
¡û
>W1711080923
LSRJ01000037
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
241621
241696
+
His
GTG
[ENA]
¡û
>W141243918
CAJY01000033
Actinomycetota
Tsukamurella sp. 1534 [CAJY]
136694
136769
+
His
GTG
[ENA]
¡û
>PL191001649
LR134452
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:10 (LR134452)
256476
256551
+
His
GTG
[ENA]
¡û
>C181035852
CP019066
Actinomycetota
Tsukamurella tyrosinosolvens MH1 [CP019066]
1543952
1543877
-
His
GTG
-
¡û
>C191193444
LR131273
Actinomycetota
Tsukamurella paurometabola NCTC10741 [LR131273]
31412
31487
+
His
GTG
-
¡û
>W09110298
ABVA01000004
Actinomycetota
Tsukamurella paurometabola DSM 20162 [ABVA]
524192
524117
-
His
GTG
[ENA]
¡û
>W1911717731
QQQF01000175
Actinomycetota
Tsukamurella pulmonis PW1004 [QQQF]
16432
16358
-
His
GTG
[ENA]
¡û
>W1810760504
QPKD01000256
Actinomycetota
Tsukamurella tyrosinosolvens PW899 [QPKD]
59068
59143
+
His
GTG
[ENA]
¡û
>C10113706
CP001966
Actinomycetota
Tsukamurella paurometabola DSM 20162 [CP001966]
1394068
1393993
-
His
GTG
[Ensembl]
¡û
>W1610910055
LSFR01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
105067
104992
-
His
GTG
[ENA]
¡û
>W1610919475
LSRE01000003
Actinomycetota
Tsukamurella pseudospumae [LSRE]
77800
77875
+
His
GTG
[ENA]
¡û
>W1610919543
LSRF01000044
Actinomycetota
Tsukamurella pseudospumae [LSRF]
128181
128256
+
His
GTG
[ENA]
¡û
>W1610919589
LSRG01000012
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
105415
105340
-
His
GTG
[ENA]
¡û
>W1610919639
LSRH01000012
Actinomycetota
Tsukamurella pulmonis [LSRH]
882195
882270
+
His
GTG
[ENA]
¡û
>W1610919704
LSRI01000024
Actinomycetota
Tsukamurella pulmonis [LSRI]
45660
45585
-
His
GTG
[ENA]
¡û
>W1610919790
LSRJ01000037
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
241621
241696
+
His
GTG
[ENA]
¡û
>W1710527734
FNLF01000002
Actinomycetota
Tsukamurella pulmonis [FNLF]
1638694
1638619
-
His
GTG
[ENA]
¡û
>W1710534717
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
1459648
1459573
-
His
GTG
[ENA]
¡û
Identical group No.603335 (3 seq.)
>PL173000048
CP001342
Actinobacteria
Pseudarthrobacter chlorophenolicus A6 plasmid:pACHL01
30974
31049
+
His
GTG
[ENA]
¡û
>W08012879
ABKU01000001
Actinomycetota
Pseudarthrobacter chlorophenolicus A6 [ABKU]
409778
409853
+
His
GTG
[ENA]
¡û
>W1730008836
FNLE01000002
Actinomycetota
Pseudarthrobacter chlorophenolicus [FNLE]
331493
331568
+
His
GTG
[ENA]
¡û
Identical group No.620895 (1 seq.)
>PL173000175
CP018784
Actinobacteria
Curtobacterium pusillum AA3 plasmid:pCPAA3
257649
257724
+
His
GTG
[ENA]
¡û
Identical group No.815228 (2 seq.)
>PL171000903
CP012886
Actinobacteria
Mycobacterium chimaera AH16 plasmid:unnamed1
231668
231741
+
His
GTG
[ENA]
¡û
>W1911241299
NSEU01000086
Actinomycetota
Mycobacterium avium FLAC0376 [NSEU]
79756
79683
-
His
GTG
[ENA]
¡û
Identical group No.818048 (1 seq.)
>PL191000670
CP027794
Actinobacteria
Rhodococcus hoagii DSSKP-R-001 plasmid:plas1 (CP027794)
9671
9598
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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