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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = TAA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.102972 (1 seq.)
>PL191000818
CP030772
Actinobacteria
Streptomyces sp. YIM 121038 plasmid:pSSP121038 (CP030772)
866144
866059
-
Leu
TAA
[ENA]
¡û
Identical group No.145126 (1 seq.)
>PL171001414
CP020040
Actinobacteria
Streptomyces sp. 3211 plasmid:p3211-1
181921
181837
-
Leu
TAA
[ENA]
¡û
Identical group No.259310 (2 seq.)
>PL171000906
CP012886
Actinobacteria
Mycobacterium chimaera AH16 plasmid:unnamed1
231907
231982
+
Leu
TAA
[ENA]
¡û
>W1911241301
NSEU01000086
Actinomycetota
Mycobacterium avium FLAC0376 [NSEU]
79517
79442
-
Leu
TAA
[ENA]
¡û
Identical group No.319234 (9 seq.)
>W1711739108
MUBO01000220
Actinomycetota
Streptomyces daghestanicus [MUBO]
14244
14318
+
Leu
TAA
[ENA]
¡û
>PL171001809
LN868939
Actinobacteria
Nocardia farcinica NCTC11134 plasmid:2
1692888
1692962
+
Leu
TAA
[ENA]
¡û
>C181200296
CP031418
Actinomycetota
Nocardia farcinica W6977 [CP031418]
4666527
4666601
+
Leu
TAA
-
¡û
>W1910433905
FVWC01000363
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 537 [FVWC]
1196
1122
-
Leu
TAA
[ENA]
¡û
>W1911422424
NXEG01000007
Actinomycetota
Nocardia farcinica CNM20091955 [NXEG]
234252
234178
-
Leu
TAA
[ENA]
¡û
>W1911422486
NXEH01000013
Actinomycetota
Nocardia farcinica CNM20080921 [NXEH]
44741
44667
-
Leu
TAA
[ENA]
¡û
>W1610079069
BDBJ01000022
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
7951
8025
+
Leu
TAA
[ENA]
¡û
>W1710077628
BDBJ01000022
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
7951
8025
+
Leu
TAA
[ENA]
¡û
>W1710599663
FTOW01000006
Actinomycetota
Nocardia farcinica [FTOW]
91643
91717
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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