This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = TAC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.337923 (17 seq.)
>W1711069496
LSFR01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
443630
443554
-
Val
TAC
[ENA]
¡û
>W1711080730
LSRG01000013
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
322839
322763
-
Val
TAC
[ENA]
¡û
>W1711080797
LSRH01000040
Actinomycetota
Tsukamurella pulmonis [LSRH]
398410
398334
-
Val
TAC
[ENA]
¡û
>W1711080811
LSRI01000001
Actinomycetota
Tsukamurella pulmonis [LSRI]
1048366
1048442
+
Val
TAC
[ENA]
¡û
>W1711080854
LSRJ01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
344139
344063
-
Val
TAC
[ENA]
¡û
>PL191001661
LR134460
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:18 (LR134460)
137221
137297
+
Val
TAC
[ENA]
¡û
>C181035842
CP019066
Actinomycetota
Tsukamurella tyrosinosolvens MH1 [CP019066]
3117419
3117343
-
Val
TAC
-
¡û
>C191193466
LR131273
Actinomycetota
Tsukamurella paurometabola NCTC10741 [LR131273]
3175463
3175539
+
Val
TAC
-
¡û
>W1911717746
QQQF01000232
Actinomycetota
Tsukamurella pulmonis PW1004 [QQQF]
38199
38123
-
Val
TAC
[ENA]
¡û
>W1810760497
QPKD01000204
Actinomycetota
Tsukamurella tyrosinosolvens PW899 [QPKD]
23921
23997
+
Val
TAC
[ENA]
¡û
>W1610910024
LSFR01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
443630
443554
-
Val
TAC
[ENA]
¡û
>W1610919597
LSRG01000013
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
322839
322763
-
Val
TAC
[ENA]
¡û
>W1610919664
LSRH01000040
Actinomycetota
Tsukamurella pulmonis [LSRH]
398410
398334
-
Val
TAC
[ENA]
¡û
>W1610919678
LSRI01000001
Actinomycetota
Tsukamurella pulmonis [LSRI]
1048366
1048442
+
Val
TAC
[ENA]
¡û
>W1610919721
LSRJ01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
344139
344063
-
Val
TAC
[ENA]
¡û
>W1710527726
FNLF01000002
Actinomycetota
Tsukamurella pulmonis [FNLF]
3118748
3118672
-
Val
TAC
[ENA]
¡û
>W1710534707
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
3488182
3488106
-
Val
TAC
[ENA]
¡û
Identical group No.505674 (3 seq.)
>PL171000893
CP012886
Actinobacteria
Mycobacterium chimaera AH16 plasmid:unnamed1
229797
229870
+
Val
TAC
[ENA]
¡û
>W1911241288
NSEU01000086
Actinomycetota
Mycobacterium avium FLAC0376 [NSEU]
81633
81560
-
Val
TAC
[ENA]
¡û
>W1911278837
NTFX01000081
Actinomycetota
Mycobacterium intracellulare WCHMC000001 [NTFX]
184
111
-
Val
TAC
[ENA]
¡û
Identical group No.620885 (1 seq.)
>PL171001349
CP018784
Actinobacteria
Curtobacterium pusillum AA3 plasmid:pCPAA3
254865
254938
+
Val
TAC
[ENA]
¡û
Identical group No.705241 (2 seq.)
>PL171001871
LT703506
Actinobacteria
Mycobacterium chimaera Mycobacterium chimaera MC045 plasmid:2
240633
240561
-
Val
TAC
[ENA]
¡û
>W1710084920
BDMY01000032
Actinomycetota
Mycobacterium avium subsp. hominissuis [BDMY]
52173
52101
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK