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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = TAG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.122605 (7 seq.)
>PL171001797
LN868939
Actinobacteria
Nocardia farcinica NCTC11134 plasmid:2
38774
38860
+
Leu
TAG
[ENA]
¡û
>C181200284
CP031418
Actinomycetota
Nocardia farcinica W6977 [CP031418]
3012452
3012538
+
Leu
TAG
-
¡û
>W1911422449
NXEG01000021
Actinomycetota
Nocardia farcinica CNM20091955 [NXEG]
54172
54086
-
Leu
TAG
[ENA]
¡û
>W1911422499
NXEH01000030
Actinomycetota
Nocardia farcinica CNM20080921 [NXEH]
54172
54086
-
Leu
TAG
[ENA]
¡û
>W1610079095
BDBJ01000118
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
14097
14011
-
Leu
TAG
[ENA]
¡û
>W1710077654
BDBJ01000118
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
14097
14011
-
Leu
TAG
[ENA]
¡û
>W1710599686
FTOW01000017
Actinomycetota
Nocardia farcinica [FTOW]
54190
54104
-
Leu
TAG
[ENA]
¡û
Identical group No.193814 (11 seq.)
>W1711069529
LSFR01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
52180
52096
-
Leu
TAG
[ENA]
¡û
>W1711080724
LSRG01000012
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
52528
52444
-
Leu
TAG
[ENA]
¡û
>W1711080925
LSRJ01000037
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
291748
291833
+
Leu
TAG
[ENA]
¡û
>PL191001651
LR134452
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:10 (LR134452)
306601
306686
+
Leu
TAG
[ENA]
¡û
>C181035854
CP019066
Actinomycetota
Tsukamurella tyrosinosolvens MH1 [CP019066]
1489965
1489882
-
Leu
TAG
-
¡û
>C191193446
LR131273
Actinomycetota
Tsukamurella paurometabola NCTC10741 [LR131273]
128666
128749
+
Leu
TAG
-
¡û
>W1810760489
QPKD01000173
Actinomycetota
Tsukamurella tyrosinosolvens PW899 [QPKD]
25929
25846
-
Leu
TAG
[ENA]
¡û
>W1610910057
LSFR01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
52180
52096
-
Leu
TAG
[ENA]
¡û
>W1610919591
LSRG01000012
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
52528
52444
-
Leu
TAG
[ENA]
¡û
>W1610919792
LSRJ01000037
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
291748
291833
+
Leu
TAG
[ENA]
¡û
>W1710534719
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
1409521
1409436
-
Leu
TAG
[ENA]
¡û
Identical group No.252806 (2 seq.)
>PL171001866
LT703506
Actinobacteria
Mycobacterium chimaera Mycobacterium chimaera MC045 plasmid:2
241215
241138
-
Leu
TAG
[ENA]
¡û
>W1710084915
BDMY01000032
Actinomycetota
Mycobacterium avium subsp. hominissuis [BDMY]
52755
52678
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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