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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = TAT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240470 (1 seq.)
>PL173000113
CP012886
Actinobacteria
Mycobacterium chimaera AH16 plasmid:unnamed1
232134
232210
+
Ile
TAT
[ENA]
¡û
Identical group No.349844 (2 seq.)
>PL171001883
LT703506
Actinobacteria
Mycobacterium chimaera Mycobacterium chimaera MC045 plasmid:2
238473
238399
-
Ile
TAT
[ENA]
¡û
>W1710084932
BDMY01000032
Actinomycetota
Mycobacterium avium subsp. hominissuis [BDMY]
48655
48581
-
Ile
TAT
[ENA]
¡û
Identical group No.638985 (1 seq.)
>PL191000411
CP023976
Actinobacteria
Streptomyces alboflavus MDJK44 plasmid:pMDJK44.1 (CP023976)
179553
179480
-
Ile
TAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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