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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = TCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4153 (15 seq.)
>W1711069504
LSFR01000002
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
1041193
1041288
+
SeC(p)
TCA
[ENA]
¡û
>W1711080653
LSRE01000050
Actinomycetota
Tsukamurella pseudospumae [LSRE]
182319
182224
-
SeC(p)
TCA
[ENA]
¡û
>W1711080697
LSRF01000058
Actinomycetota
Tsukamurella pseudospumae [LSRF]
1119704
1119799
+
SeC(p)
TCA
[ENA]
¡û
>W1711080702
LSRG01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
47044
47139
+
SeC(p)
TCA
[ENA]
¡û
>W1711080899
LSRJ01000011
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
1152048
1152143
+
SeC(p)
TCA
[ENA]
¡û
>PL191001659
LR134459
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:17 (LR134459)
156290
156195
-
Sec
TCA
[ENA]
¡û
>C181035820
CP019066
Actinomycetota
Tsukamurella tyrosinosolvens MH1 [CP019066]
1247488
1247583
+
SeC
TCA
-
¡û
>C191193490
LR131273
Actinomycetota
Tsukamurella paurometabola NCTC10741 [LR131273]
362569
362474
-
Sec
TCA
-
¡û
>W1810760487
QPKD01000155
Actinomycetota
Tsukamurella tyrosinosolvens PW899 [QPKD]
7330
7425
+
Sec
TCA
[ENA]
¡û
>W1610910032
LSFR01000002
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
1041193
1041288
+
SeC(p)
TCA
[ENA]
¡û
>W1610919520
LSRE01000050
Actinomycetota
Tsukamurella pseudospumae [LSRE]
182319
182224
-
SeC(p)
TCA
[ENA]
¡û
>W1610919564
LSRF01000058
Actinomycetota
Tsukamurella pseudospumae [LSRF]
1119704
1119799
+
SeC(p)
TCA
[ENA]
¡û
>W1610919569
LSRG01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
47044
47139
+
SeC(p)
TCA
[ENA]
¡û
>W1610919766
LSRJ01000011
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
1152048
1152143
+
SeC(p)
TCA
[ENA]
¡û
>W1710534653
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
1164658
1164753
+
SeC(p)
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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