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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = TCT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.252808 (2 seq.)
>PL171001885
LT703506
Actinobacteria
Mycobacterium chimaera Mycobacterium chimaera MC045 plasmid:2
238199
238122
-
Arg
TCT
[ENA]
¡û
>W1710084934
BDMY01000032
Actinomycetota
Mycobacterium avium subsp. hominissuis [BDMY]
48381
48304
-
Arg
TCT
[ENA]
¡û
Identical group No.269541 (1 seq.)
>PL171000907
CP012886
Actinobacteria
Mycobacterium chimaera AH16 plasmid:unnamed1
232012
232089
+
Arg
TCT
[ENA]
¡û
Identical group No.337921 (10 seq.)
>W1711069525
LSFR01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
113092
113166
+
Arg
TCT
[ENA]
¡û
>W1711080712
LSRG01000012
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
113440
113514
+
Arg
TCT
[ENA]
¡û
>W1711080926
LSRJ01000037
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
233596
233522
-
Arg
TCT
[ENA]
¡û
>PL191001652
LR134452
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:10 (LR134452)
248451
248377
-
Arg
TCT
[ENA]
¡û
>C181035821
CP019066
Actinomycetota
Tsukamurella tyrosinosolvens MH1 [CP019066]
1552466
1552540
+
Arg
TCT
-
¡û
>W1810760506
QPKD01000256
Actinomycetota
Tsukamurella tyrosinosolvens PW899 [QPKD]
50406
50332
-
Arg
TCT
[ENA]
¡û
>W1610910053
LSFR01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
113092
113166
+
Arg
TCT
[ENA]
¡û
>W1610919579
LSRG01000012
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
113440
113514
+
Arg
TCT
[ENA]
¡û
>W1610919793
LSRJ01000037
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
233596
233522
-
Arg
TCT
[ENA]
¡û
>W1710534654
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
1467673
1467747
+
Arg
TCT
[ENA]
¡û
Identical group No.422978 (1 seq.)
>PL171001373
CP018784
Actinobacteria
Curtobacterium pusillum AA3 plasmid:pCPAA3
265833
265907
+
Arg
TCT
[ENA]
¡û
Identical group No.601804 (1 seq.)
>PL191000864
CP031166
Actinobacteria
Euzebya sp. DY32-46 plasmid:pEDY32-46I (CP031166)
356713
356786
+
Arg
TCT
[ENA]
¡û
Identical group No.603337 (3 seq.)
>PL173000052
CP001342
Actinobacteria
Pseudarthrobacter chlorophenolicus A6 plasmid:pACHL01
33638
33711
+
Arg
TCT
[ENA]
¡û
>W08012883
ABKU01000001
Actinomycetota
Pseudarthrobacter chlorophenolicus A6 [ABKU]
412442
412515
+
Arg
TCT
[ENA]
¡û
>W1730008840
FNLE01000002
Actinomycetota
Pseudarthrobacter chlorophenolicus [FNLE]
334157
334230
+
Arg
TCT
[ENA]
¡û
Identical group No.697806 (4 seq.)
>W1711080884
LSRJ01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
8509
8581
+
Arg
TCT
[ENA]
¡û
>PL191001636
LR134450
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:8 (LR134450)
281161
281089
-
Arg
TCT
[ENA]
¡û
>W1610919751
LSRJ01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
8509
8581
+
Arg
TCT
[ENA]
¡û
>W1710534683
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
2708699
2708771
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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