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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = TGA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.34543 (9 seq.)
>PL171000859
CP012477
Actinobacteria
Arthrobacter sp. ERGS1:01 plasmid:unnamed2
555181
555093
-
Ser
TGA
[ENA]
¡û
>W1810167493
PJIN01000005
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
50068
50156
+
Ser
TGA
[ENA]
¡û
>W1810167528
PJIO01000002
Actinomycetota
Arthrobacter sp. GMC3 [PJIO]
516429
516341
-
Ser
TGA
[ENA]
¡û
>W1810242475
PPXB01000001
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
426607
426519
-
Ser
TGA
[ENA]
¡û
>W1810242526
PPXC01000001
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
478968
478880
-
Ser
TGA
[ENA]
¡û
>W1511343682
JREV01000043
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
12364
12452
+
Ser
TGA
[ENA]
¡û
>C161052824
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
77326
77414
+
Ser
TGA
[Ensembl]
¡û
>C161060679
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
4212626
4212538
-
Ser
TGA
[Ensembl]
¡û
>W1710537466
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
2829944
2830032
+
Ser
TGA
[ENA]
¡û
Identical group No.65477 (3 seq.)
>PL171000324
CP001342
Actinobacteria
Pseudarthrobacter chlorophenolicus A6 plasmid:pACHL01
32564
32651
+
Ser
TGA
[ENA]
¡û
>W08008050
ABKU01000001
Actinomycetota
Pseudarthrobacter chlorophenolicus A6 [ABKU]
411368
411455
+
Ser
TGA
[ENA]
¡û
>W1710527641
FNLE01000002
Actinomycetota
Pseudarthrobacter chlorophenolicus [FNLE]
333083
333170
+
Ser
TGA
[ENA]
¡û
Identical group No.67834 (1 seq.)
>PL171001345
CP018784
Actinobacteria
Curtobacterium pusillum AA3 plasmid:pCPAA3
253159
253248
+
Ser
TGA
[ENA]
¡û
Identical group No.87341 (33 seq.)
>W1711069520
LSFR01000004
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
158630
158545
-
Ser
TGA
[ENA]
¡û
>W1711080623
LSRE01000011
Actinomycetota
Tsukamurella pseudospumae [LSRE]
14764
14679
-
Ser
TGA
[ENA]
¡û
>W1711080665
LSRF01000008
Actinomycetota
Tsukamurella pseudospumae [LSRF]
69871
69956
+
Ser
TGA
[ENA]
¡û
>W1711080745
LSRG01000016
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
159536
159451
-
Ser
TGA
[ENA]
¡û
>W1711080766
LSRH01000010
Actinomycetota
Tsukamurella pulmonis [LSRH]
2454
2369
-
Ser
TGA
[ENA]
¡û
>W1711080844
LSRI01000027
Actinomycetota
Tsukamurella pulmonis [LSRI]
76998
76913
-
Ser
TGA
[ENA]
¡û
>W1711080868
LSRJ01000004
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
8910
8825
-
Ser
TGA
[ENA]
¡û
>W1711460538
MJEI01000039
Actinomycetota
Williamsia sp. 1135 [MJEI]
1694
1779
+
Ser
TGA
[ENA]
¡û
>W1711460601
MJEJ01000037
Actinomycetota
Williamsia sp. 1138 [MJEJ]
137235
137322
+
Ser
TGA
[ENA]
¡û
>W131185137
ARTM01000032
Actinomycetota
Nocardia sp. 348MFTsu5.1 [ARTM]
240242
240329
+
Ser
TGA
[ENA]
¡û
>W141194580
AYTE01000004
Actinomycetota
Williamsia sp. D3 [AYTE]
81919
81834
-
Ser
TGA
[ENA]
¡û
>WENV170552805
CXWK01002194
[CXWK] wastewater metagenome; activated sludge
25782
25697
-
Ser
TGA
[ENA]
¢þ
>PL191001653
LR134456
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:14 (LR134456)
356861
356946
+
Ser
TGA
[ENA]
¡û
>C181035827
CP019066
Actinomycetota
Tsukamurella tyrosinosolvens MH1 [CP019066]
4739853
4739768
-
Ser
TGA
-
¡û
>W09110265
ABVA01000001
Actinomycetota
Tsukamurella paurometabola DSM 20162 [ABVA]
448606
448691
+
Ser
TGA
[ENA]
¡û
>W1911717737
QQQF01000199
Actinomycetota
Tsukamurella pulmonis PW1004 [QQQF]
66836
66921
+
Ser
TGA
[ENA]
¡û
>W1810658299
QJJF01000007
Actinomycetota
Williamsia faeni DSM 45372 [QJJF]
137370
137457
+
Ser
TGA
[ENA]
¡û
>W1810671183
QJSP01000004
Actinomycetota
Williamsia limnetica DSM 45521 [QJSP]
8011
7924
-
Ser
TGA
[ENA]
¡û
>W1810760470
QPKD01000056
Actinomycetota
Tsukamurella tyrosinosolvens PW899 [QPKD]
21381
21296
-
Ser
TGA
[ENA]
¡û
>C10113680
CP001966
Actinomycetota
Tsukamurella paurometabola DSM 20162 [CP001966]
4219782
4219697
-
Ser
TGA
[Ensembl]
¡û
>C161037601
CP011853
Actinomycetota
Gordonia phthalatica QH-11 [CP011853]
303409
303494
+
Ser
TGA
[Ensembl]
¡û
>W1610069083
BCRV01000001
Actinomycetota
Skermania piniformis NBRC 15059 [BCRV]
570242
570157
-
Ser
TGA
[ENA]
¡û
>W1610910048
LSFR01000004
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
158630
158545
-
Ser
TGA
[ENA]
¡û
>W1610919490
LSRE01000011
Actinomycetota
Tsukamurella pseudospumae [LSRE]
14764
14679
-
Ser
TGA
[ENA]
¡û
>W1610919532
LSRF01000008
Actinomycetota
Tsukamurella pseudospumae [LSRF]
69871
69956
+
Ser
TGA
[ENA]
¡û
>W1610919612
LSRG01000016
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
159536
159451
-
Ser
TGA
[ENA]
¡û
>W1610919633
LSRH01000010
Actinomycetota
Tsukamurella pulmonis [LSRH]
2454
2369
-
Ser
TGA
[ENA]
¡û
>W1610919711
LSRI01000027
Actinomycetota
Tsukamurella pulmonis [LSRI]
76998
76913
-
Ser
TGA
[ENA]
¡û
>W1610919735
LSRJ01000004
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
8910
8825
-
Ser
TGA
[ENA]
¡û
>W1710066456
BCRV01000001
Actinomycetota
Skermania piniformis NBRC 15059 [BCRV]
570242
570157
-
Ser
TGA
[ENA]
¡û
>W1710527697
FNLF01000002
Actinomycetota
Tsukamurella pulmonis [FNLF]
393617
393702
+
Ser
TGA
[ENA]
¡û
>W1710527898
FNLM01000034
Actinomycetota
Gordonia westfalica [FNLM]
3685617
3685532
-
Ser
TGA
[ENA]
¡û
>W1710534645
FNSA01000001
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
46060
45975
-
Ser
TGA
[ENA]
¡û
Identical group No.88295 (10 seq.)
>W1711739122
MUBO01000379
Actinomycetota
Streptomyces daghestanicus [MUBO]
16645
16560
-
Ser
TGA
[ENA]
¡û
>PL171001821
LN868939
Actinobacteria
Nocardia farcinica NCTC11134 plasmid:2
511508
511423
-
Ser
TGA
[ENA]
¡û
>C014814
AP006618
Actinomycetota
Nocardia farcinica IFM 10152 [AP006618]
236369
236453
+
Ser
TGA
[Ensembl]
¡û
>C181200312
CP031418
Actinomycetota
Nocardia farcinica W6977 [CP031418]
3485142
3485057
-
Ser
TGA
-
¡û
>W1911422420
NXEG01000005
Actinomycetota
Nocardia farcinica CNM20091955 [NXEG]
451297
451382
+
Ser
TGA
[ENA]
¡û
>W1911422506
NXEH01000038
Actinomycetota
Nocardia farcinica CNM20080921 [NXEH]
37777
37862
+
Ser
TGA
[ENA]
¡û
>W1911573013
PDDW01000001
Actinomycetota
Nocardia sp. FDAARGOS_372 [PDDW]
4927955
4928040
+
Ser
TGA
[ENA]
¡û
>W1610079055
BDBJ01000003
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
111001
110916
-
Ser
TGA
[ENA]
¡û
>W1710077614
BDBJ01000003
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
111001
110916
-
Ser
TGA
[ENA]
¡û
>W1710599657
FTOW01000003
Actinomycetota
Nocardia farcinica [FTOW]
116632
116547
-
Ser
TGA
[ENA]
¡û
Identical group No.95783 (4 seq.)
>W1711080883
LSRJ01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
7234
7319
+
Ser
TGA
[ENA]
¡û
>PL191001635
LR134450
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:8 (LR134450)
282436
282351
-
Ser
TGA
[ENA]
¡û
>W1610919750
LSRJ01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
7234
7319
+
Ser
TGA
[ENA]
¡û
>W1710534682
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
2707424
2707509
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK