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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = TGG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238915 (1 seq.)
>PL191000855
CP031166
Actinobacteria
Euzebya sp. DY32-46 plasmid:pEDY32-46I (CP031166)
349437
349513
+
Pro
TGG
[ENA]
¡û
Identical group No.247695 (3 seq.)
>PL171000892
CP012886
Actinobacteria
Mycobacterium chimaera AH16 plasmid:unnamed1
229714
229791
+
Pro
TGG
[ENA]
¡û
>W1911241287
NSEU01000086
Actinomycetota
Mycobacterium avium FLAC0376 [NSEU]
81716
81641
-
Pro
TGG
[ENA]
¡û
>W1911278836
NTFX01000081
Actinomycetota
Mycobacterium intracellulare WCHMC000001 [NTFX]
267
192
-
Pro
TGG
[ENA]
¡û
Identical group No.262418 (3 seq.)
>PL173000050
CP001342
Actinobacteria
Pseudarthrobacter chlorophenolicus A6 plasmid:pACHL01
32183
32258
+
Pro
TGG
[ENA]
¡û
>W08012881
ABKU01000001
Actinomycetota
Pseudarthrobacter chlorophenolicus A6 [ABKU]
410987
411062
+
Pro
TGG
[ENA]
¡û
>W1730008838
FNLE01000002
Actinomycetota
Pseudarthrobacter chlorophenolicus [FNLE]
332702
332777
+
Pro
TGG
[ENA]
¡û
Identical group No.298905 (25 seq.)
>W1711069516
LSFR01000003
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
428
354
-
Pro
TGG
[ENA]
¡û
>W1711080643
LSRE01000048
Actinomycetota
Tsukamurella pseudospumae [LSRE]
142764
142838
+
Pro
TGG
[ENA]
¡û
>W1711080720
LSRG01000012
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
248044
247970
-
Pro
TGG
[ENA]
¡û
>W1711080921
LSRJ01000037
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
97770
97844
+
Pro
TGG
[ENA]
¡û
>W1711662757
MQUQ01000020
Actinomycetota
Amycolatopsis coloradensis [MQUQ]
118604
118530
-
Pro
TGG
[ENA]
¡û
>W141451911
JFBM01000019
Actinomycetota
Amycolatopsis lurida NRRL 2430 [JFBM]
113976
113902
-
Pro
TGG
[ENA]
¡û
>PL191001647
LR134452
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:10 (LR134452)
112629
112703
+
Pro
TGG
[ENA]
¡û
>C181016771
CP015163
Actinomycetota
Amycolatopsis albispora WP1 [CP015163]
8516820
8516895
+
Pro
TGG
-
¡û
>C181019537
CP016353
Actinomycetota
Prauserella marina DSM 45268 [CP016353]
1883405
1883331
-
Pro
TGG
-
¡û
>C181035850
CP019066
Actinomycetota
Tsukamurella tyrosinosolvens MH1 [CP019066]
1690784
1690710
-
Pro
TGG
-
¡û
>W09110297
ABVA01000004
Actinomycetota
Tsukamurella paurometabola DSM 20162 [ABVA]
649189
649265
+
Pro
TGG
[ENA]
¡û
>W141712107
JMQI01000014
Actinomycetota
Amycolatopsis rifamycinica [JMQI]
66297
66221
-
Pro
TGG
[ENA]
¡û
>W1910994783
NKYE01000002
Actinomycetota
Amycolatopsis antarctica AU-G6 [NKYE]
205
130
-
Pro
TGG
[ENA]
¡û
>W1911678713
QHJI01000017
Actinomycetota
Amycolatopsis sp. WAC 04169 [QHJI]
39832
39908
+
Pro
TGG
[ENA]
¡û
>W1810608691
QGTN01000001
Actinomycetota
Prauserella marina DSM 45268 [QGTN]
1291284
1291358
+
Pro
TGG
[ENA]
¡û
>W1810760473
QPKD01000070
Actinomycetota
Tsukamurella tyrosinosolvens PW899 [QPKD]
22934
23008
+
Pro
TGG
[ENA]
¡û
>C151018994
CP007219
Actinomycetota
Amycolatopsis lurida [CP007219]
4500472
4500398
-
Pro
TGG
-
¡û
>C10113673
CP001966
Actinomycetota
Tsukamurella paurometabola DSM 20162 [CP001966]
1519058
1519134
+
Pro
TGG
[Ensembl]
¡û
>W1610910044
LSFR01000003
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
428
354
-
Pro
TGG
[ENA]
¡û
>W1610919510
LSRE01000048
Actinomycetota
Tsukamurella pseudospumae [LSRE]
142764
142838
+
Pro
TGG
[ENA]
¡û
>W1610919587
LSRG01000012
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
248044
247970
-
Pro
TGG
[ENA]
¡û
>W1610919788
LSRJ01000037
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
97770
97844
+
Pro
TGG
[ENA]
¡û
>W1710512133
FMZE01000001
Actinomycetota
Prauserella marina [FMZE]
81851
81775
-
Pro
TGG
[ENA]
¡û
>W1710534715
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
1603499
1603425
-
Pro
TGG
[ENA]
¡û
>W1710536152
FNTA01000004
Actinomycetota
Amycolatopsis lurida [FNTA]
1956317
1956391
+
Pro
TGG
[ENA]
¡û
Identical group No.319233 (7 seq.)
>PL171001795
LN868939
Actinobacteria
Nocardia farcinica NCTC11134 plasmid:2
38564
38640
+
Pro
TGG
[ENA]
¡û
>C181200282
CP031418
Actinomycetota
Nocardia farcinica W6977 [CP031418]
3012242
3012316
+
Pro
TGG
-
¡û
>W1911422447
NXEG01000021
Actinomycetota
Nocardia farcinica CNM20091955 [NXEG]
54382
54308
-
Pro
TGG
[ENA]
¡û
>W1911422497
NXEH01000030
Actinomycetota
Nocardia farcinica CNM20080921 [NXEH]
54382
54308
-
Pro
TGG
[ENA]
¡û
>W1610079093
BDBJ01000118
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
14307
14231
-
Pro
TGG
[ENA]
¡û
>W1710077652
BDBJ01000118
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
14307
14231
-
Pro
TGG
[ENA]
¡û
>W1710599684
FTOW01000017
Actinomycetota
Nocardia farcinica [FTOW]
54400
54324
-
Pro
TGG
[ENA]
¡û
Identical group No.338532 (4 seq.)
>W1711080875
LSRJ01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
4726
4800
+
Pro
TGG
[ENA]
¡û
>PL191001627
LR134450
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:8 (LR134450)
284944
284870
-
Pro
TGG
[ENA]
¡û
>W1610919742
LSRJ01000005
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
4726
4800
+
Pro
TGG
[ENA]
¡û
>W1710534674
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
2704916
2704990
+
Pro
TGG
[ENA]
¡û
Identical group No.349841 (2 seq.)
>PL171001870
LT703506
Actinobacteria
Mycobacterium chimaera Mycobacterium chimaera MC045 plasmid:2
240722
240646
-
Pro
TGG
[ENA]
¡û
>W1710084919
BDMY01000032
Actinomycetota
Mycobacterium avium subsp. hominissuis [BDMY]
52262
52186
-
Pro
TGG
[ENA]
¡û
Identical group No.380723 (2 seq.)
>PL171001365
CP018784
Actinobacteria
Curtobacterium pusillum AA3 plasmid:pCPAA3
261019
261095
+
Pro
TGG
[ENA]
¡û
>W1810681133
QKSQ01000001
Actinomycetota
Curtobacterium sp. MCSS17_016 [QKSQ]
532541
532465
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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